genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

MIT License

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Expose read length settings to allow other analysis of other amplicon regions. #13

Closed druvus closed 4 years ago

druvus commented 4 years ago

nf-core/nanoclust pull request

Many thanks for contributing to nf-core/nanoclust!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

This PR adds possibility to set minimum and maximum read length. This will allow users to use other amplicons than full length 16S, such ass 16S-23S or 18S.

PR checklist

[x] This comment contains a description of changes (with reason)
[x] Ensure the test suite passes (nextflow run . -profile test,docker).
[x] Documentation in docs is updated

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