Installation of NanoCLUST

genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

MIT License

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Installation of NanoCLUST #25

Closed gghyl closed 3 years ago

gghyl commented 3 years ago

Hi,

I would like to install NanoCLUST, but I am not sure how to install it as I cannot find the command for installation of NanoCLUST from either Github or Conda. I have installed the Nextflow and conda in my desktop. What should I do next to install NanoCLUST? Thank you.

genomicsITER commented 3 years ago

Hi,

Thank you for opening the issue. Installation and usage is specified in README.md and /docs.

Before getting NanoCLUST:

Install conda/docker (Miniconda 3 recommended)
Install nextflow (Quick Start section from https://www.nextflow.io/). Java is required for Nextflow
Clone the repository with the git clone command as usual

There is no need to install anything else. Nextflow software run the pipeline from the files you have already cloned