genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
MIT License
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unable to specify hdbscan option "-min_samples" #26

Open Robvh-git opened 3 years ago

Robvh-git commented 3 years ago

Hi,

in the manual of hdbscan (https://hdbscan.readthedocs.io/en/latest/parameter_selection.html) it is specified that the "min_samples" option is a essential parameter. However, checking umap_hdbscan.py and the usage file, it does not seem to be possible to edit this parameter in NanoCLUST. Why is this not possible and are you planning to implement this option in the future?

Thank you in advance.

Regards, Rob