Open Socotr opened 3 years ago
Hello, I have the same error message while runing the test (with nextflow 18.10.1) : nextflow run main.nf -profile test,docker
Here is the output :
NanoCLUST v1.0dev
Run Name : goofy_bassi Reads : /home/cluster/programs/NanoCLUST/test_datasets/mock4_run3bc08_5000.fastq Max Resources : 128 GB memory, 16 cpus, 10d time per job Container : docker - [:] Output dir : ./results Launch dir : /home/cluster/programs/NanoCLUST Working dir : /home/cluster/programs/NanoCLUST/work Script dir : /home/cluster/programs/NanoCLUST User : cluster Config Profile : test,docker Config Description: Minimal test dataset to check pipeline function
ERROR ~ No such variable: barcode
-- Check script 'main.nf' at line: 202 or see '.nextflow.log' file for more details
Any clue on where the error comes from would be appreciated.
Hello, I've been trying to test the pipeline with one of my samples (fastq file) but every time I tried this error kept appearing (no matter if I use conda or docker ) :
ERROR ~ No such variable: barcode -- Check script 'main.nf' at line: 202 or see '.nextflow.log' file for more details.
Run Name : high_torvalds Reads : /home/nutrigenomics/bioinfo_soco/barcodes_4run_vsearch/barcode12.fastq Max Resources : 128 GB memory, 16 cpus, 10d time per job Output dir : ./results Launch dir : /home/nutrigenomics/NanoCLUST-master/ Working dir : /home/nutrigenomics/NanoCLUST-master/work Script dir : /home/nutrigenomics/NanoCLUST-master User : nutrigenomics Config Profile : conda Config Description: Minimal test dataset to check pipeline function ---------------------------------------------------- ERROR ~ No such variable: barcode -- Check script 'main.nf' at line: 202 or see '.nextflow.log' file for more details
The input file is a fastq file after nanopore sequencing. I would appreciate your response