genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
MIT License
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Noting toxonomy information for taxid from api.unipet using get_abundance.py #56

Open simaafshar opened 2 years ago

simaafshar commented 2 years ago

Hi, I have an issue with using database. When I am calling for example "http://api.unipept.ugent.be/api/v1/taxonomy.json?input[]=817&extra=true&names=true" using NanoClust, some items like "species_name","genus_name", "family_name",'order_name' and "class_name" are empty, however; regarding the document at your site those should not be empty." https://unipept.ugent.be/apidocs/taxonomy". I also checked it up on mock4_run3bc08_5000.fastq as a sample test in NanoClust dataset. I would appreciate it if you could let me know how to fix it. Sima