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genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
MIT License
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ERROR: Nextflow DSL1 is no longer supported #81

Closed iaposto closed 1 year ago

iaposto commented 1 year ago

Hello,

I have installed nexflow 23.04.1 in a clean conda env and ran the command nextflow run main.nf -profile conda --reads 'sample.fastq' --db "db/16S_ribosomal_RNA" --tax 'db/taxdb/' I get the following error: N E X T F L O W ~ version 23.04.1 Nextflow DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x or earlier

Also, updating the pipeline with nextflow pull nf-core/nanoclust gives this error: Checking nf-core/nanoclust ... WARN: Cannot read project manifest -- Cause: Remote resource not found: https://api.github.com/repos/nf-core/nanoclust/contents/nextflow.config Remote resource not found: https://api.github.com/repos/nf-core/nanoclust/contents/main.nf

Any suggestion? Thanks!

iaposto commented 1 year ago

Issue resolved by installing an earlier version of Nextflow (22.10.6)