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genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
MIT License
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Remote resource not found when running via Nextflow with nf-core/nanoclust #86

Open alanorth opened 1 year ago

alanorth commented 1 year ago

I'm trying to run nf-core/nanoclust using Nextflow 23.04.2 as details in the comments of main.nf:

$ nextflow run nf-core/nanoclust --reads /home/aorth/data/basecalled_r9.4.1_e8_hac_v3.3.fastq --db "/home/aorth/db" --tax "~/taxdb" -profile singularity
N E X T F L O W  ~  version 23.04.2
Pulling nf-core/nanoclust ...
WARN: Cannot read project manifest -- Cause: Remote resource not found: https://api.github.com/repos/nf-core/nanoclust/contents/nextflow.config
Remote resource not found: https://api.github.com/repos/nf-core/nanoclust/contents/main.nf

Indeed this file is HTTP 404. Is still a supported way of running NanoCLUST?

ealderli commented 8 months ago

Hi @alanorth, did you eventually succeed in solving this error? I'm currently struggling with the same issue.

alanorth commented 7 months ago

@ealderli from my notes, it seems our student switched to porefile for classifying full-length 16S reads from a Nanopore sequencer instead. Sorry...