jennyfothergill commented 1 year ago

nf-core/nanoclust pull request

This PR adds a singularity profile, fixes the conda profile, fixes the test db paths, and updates the container for consensus_classifciation.

PR checklist

[x] This comment contains a description of changes (with reason)
[x] If you've fixed a bug or added code that should be tested, add tests!
[ ] If necessary, also make a PR on the nf-core/nanoclust branch on the nf-core/test-datasets repo
[x] Ensure the test suite passes (nextflow run . -profile test,docker). I have tested the test example using the singularity profile.
[ ] Make sure your code lints (nf-core lint .).
[x] Documentation in docs is updated
[ ] CHANGELOG.md is updated
[x] README.md is updated

Learn more about contributing: CONTRIBUTING.md

jennyfothergill commented 1 year ago

should fix #70, #77, #62, #60

danpal96 commented 9 months ago

@jennyfothergill I have also tried to create a singularity profile but it always ends giving me this error:

BLAST Database error: No alias or index file found for nucleotide database [/tmp/db] in search path [/A2/danielpalma/projects/smk-ont-amplicon/resources/PGP-test/nf_test/NanoCLUST/work/0d/af38afc8c48e1022cc441cdcb524fb::/tmp/db/taxdb:]

Does this happen to you?

genomicsITER / NanoCLUST

Add singularity profile #89

nf-core/nanoclust pull request

PR checklist