Follow Report for Updating Graph Structure Learning

genophenoenvo / docker

List of Docker images used in analyses

GNU General Public License v3.0

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Closed rbartelme closed 4 years ago

rbartelme commented 4 years ago

[x] Follow paper methods outlined in this report
[x] Troubleshoot graph learning
This is necessary to compare algorithmic learning vs. the knowledge informed directed acyclic graph in Issue #23

rbartelme commented 4 years ago

Rsmax2, mmhc, and h2pc yielded incomplete graphs. Testing hill climbing and tabu greedy searching.

rbartelme commented 4 years ago

hc and tabu searches work best. Whitelisted and blacklisted arcs are updated in script.

rbartelme commented 4 years ago

Implemented changes in code.