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genophenoenvo / docker

List of Docker images used in analyses
GNU General Public License v3.0
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Test Julia Phylonet #3

Closed rbartelme closed 4 years ago

rbartelme commented 4 years ago

After Julia integration is complete, test install with mock data from documentation

rbartelme commented 4 years ago

Moved from sprint 29 to 30.

rbartelme commented 4 years ago

Documentation will be created as a separate issue for a future sprint. This method may only be relevant for the Sorghum data.

rbartelme commented 4 years ago

I am going to close issue. During testing I uncovered some interoperability issues between the docker invocation of RUN julia -e 'using Pkg; Pkg.add(["CSV","DataFrames","StatsModels","Gadfly","RCall","PhyloNetworks","PhyloPlots"])' vs. what is available in the container.

I tried loading the Julia packages into the Julia lang API from the command line, and nothing loaded. So I think this is a container level issue, and will be creating a new issue to move to the backlog, since this is not a current priority.

New issue is #9