Troubleshoot Manual DAG fit

genophenoenvo / docker

List of Docker images used in analyses

GNU General Public License v3.0

0 stars 0 forks source link

Troubleshoot Manual DAG fit #30

Closed rbartelme closed 4 years ago

rbartelme commented 4 years ago

[x] Spin up Docker container again and try fitting season 4 data to manual DAG
[x] If this does not work, only compare tabu and hill-climbing results for progressing test analyses

rbartelme commented 4 years ago

Manual DAG data fitting throws an error that causes the library(parallel) PSOCK, for the serial parallelization of data fitting, to crash. Generally this corrupts the Rsession since this is directly interacting with R's worker in the background. Manual DAG could be eliminated, and replaced with statistical model functions as referenced here, under the header "Creating Custom Networks From Distributions"

rbartelme commented 4 years ago

Moving to done, since cross validation Issue #27 will inform the optimal algorithmic choice and yield some comparative metrics.