Encode Shiny App Network Plot Layout

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List of Docker images used in analyses

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Encode Shiny App Network Plot Layout #35

Closed rbartelme closed 4 years ago

rbartelme commented 4 years ago

External To-Do's

[x] Export old bnlearn output for Shiny App

Inside Shiny To-Do's

~- [ ] Import dataset (? - not sure if this is necessary or not)~

[x] Import network file
[x] Add Rgraphviz plot function

If this will work with old network, and the code is orthogonal, changing inputs should be less of a headache!

Possible next steps after this issue:

Network Query API (highest priority)
Requirements for query
Multiple Network plots for each site?

rbartelme commented 4 years ago

Need to revisit the fitted network exported file format. The file was suspiciously small after using the .dsc network file format. May have to try the old xml format.

Very close. Kicking this to sprint 41.

rbartelme commented 4 years ago

This is easier to do if the programs are run sequentially, i.e. clean-up to network to shiny app, and the network is already in the .Renviron. All the import functions for external file formatting seem to create bigger computational bottlenecks than running the network fitting. This could be due to the fitting being parallelized.

Plot function is added to the server/ui.

Maybe there's a way to save the network output to the .Renviron so it can load with the app??

rbartelme commented 4 years ago

Added a prototype select for highlighting the nodes in the plot