KristinaRiemer
commented
3 years ago WIP notes:
Log into server w/ ssh -i ~/.ssh/id_rsa kristinariemer@128.196.65.173
Copy files and data for model runs over to server: git clone https://github.com/genophenoenvo/neon-datasets.git
Need to install all R and Python packages
R: readr, dplyr, udunits2, plantecophys, tidyr, aws.s3 (in interactive R session, add local libPath with .libPaths(c("/home/kristinariemer/r_libs/", .libPaths())), install.packages, need to add libPaths to R scripts)
had to install some other programs (openssl, libcurl, netcdf) to get curl and aws.s3 installed
Python: pandas, datetime, sklearn (with python3 -m pip install [library]
This needs to be working by Thursday May 20.
Double check the submission time is afternoon-ish for North America.