genophenoenvo / terraref-datasets

Repository for code and small datasets derived from the TERRA REF program
MIT License
0 stars 3 forks source link

Run Variant Effect Predictor on vcf file #7

Closed dlebauer closed 3 years ago

dlebauer commented 4 years ago

Pankaj suggested that we annotate the variants from this combined VCF file: http://datacommons.cyverse.org/browse/iplant/home/shared/terraref/genomics/derived_data/bap/resequencing/danforth_center/version1/hapmap.

dlebauer commented 4 years ago

@MagicMilly please link to the vcf file in the phenotypes readme

dlebauer commented 3 years ago

old and out of date