Transfer VCF of BAP Cultivars from all seasons to CyVerse Data Store

genophenoenvo / terraref-datasets

Repository for code and small datasets derived from the TERRA REF program

MIT License

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Closed rbartelme closed 4 years ago

rbartelme commented 4 years ago

[x] Use wget https://data.monarchinitiative.org/genophenoenvo/vcf/all_combined.filtered.recode.allseasons.vcf.gz --no-check-certificate to push data rom @kshefchek into CyVerse VICE Docker Container Environment
[x] Decompress VCF file inside Docker container environment
[x] Move to folder in CyVerse data store with iRODS

rbartelme commented 4 years ago

Decompressed VCF is in /iplant/home/rbartelme/sorghum_BAP_vcf_all_seasons