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geodynamics / relax

Relax implements a semi-analytic Fourier-domain solver and equivalent body forces to compute quasi-static relaxation of stress perturbation.
GNU General Public License v3.0
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GMT fatal error #1

Open rzinke opened 4 years ago

rzinke commented 4 years ago

I receive a "fatal error" when running the practice file for a left-lateral strike slip fault. I copied and pasted the code from Figure 6 in the user documentation. When I run the launch file, I get the message:

GMT Fatal Error: No SI/US keyword in GMT configuration file (FONT_LABEL = 12p,Helvetica,black )

None of the .grd files are produced. Has anyone encountered this error before?

Thanks

sbarbot commented 4 years ago

Hi Rob,

This is probably caused by running Relax when have the libraries for GMT 5.0 or a superior version in your PATH. Do Relax behave correctly otherwise? Does it produce the right output and can you visualize it okay?

Sylvain

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 2:50:17 PM To: geodynamics/relax relax@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [geodynamics/relax] GMT fatal error (#1)

I receive a "fatal error" when running the practice file for a left-lateral strike slip fault. I copied and pasted the code from Figure 6 in the user documentation. When I run the launch file, I get the message:

GMT Fatal Error: No SI/US keyword in GMT configuration file (FONT_LABEL = 12p,Helvetica,black )

Is this a concern?

Thanks

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rzinke commented 4 years ago

Hi @sbarbot, I removed the paths to GMT 6.0 in my shell. Relax does not produce the necessary files. It only produces these: cgrid.vtp report.txt rfaults-001.vtp rfaults-001.xy

The error message looks like this: coseismic event 001 I | Dt | tm(ve) | tm(pl) | tm(as) | t/tmax | power | C:E^i | GMT Fatal Error: No SI/US keyword in GMT configuration file (FONT_LABEL = 12p,Helvetica,black )

This is strange to me, because a few weeks ago I was able to run the example script successfully.

sbarbot commented 4 years ago

Hi Rob,

Are you running the binary files? If so, you need to first run

source ./setup.sh

to set the environment variables correctly.

S.

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 9:50:08 PM To: geodynamics/relax relax@noreply.github.com Cc: Sylvain Barbot sbarbot@usc.edu; Mention mention@noreply.github.com Subject: Re: [geodynamics/relax] GMT fatal error (#1)

Hi @sbarbothttps://urldefense.com/v3/__https://github.com/sbarbot__;!!LIr3w8kk_Xxm!_s5pHnZAvw8voqo8dPbyYQh6clnz4647ZRYnSqkYRBiEAdembuVI8lC6AZ4b8Us$, I removed the paths to GMT 6.0 in my shell. Relax does not produce the necessary files. It only produces these: cgrid.vtp report.txt rfaults-001.vtp rfaults-001.xy

The error message looks like this: coseismic event 001 I | Dt | tm(ve) | tm(pl) | tm(as) | t/tmax | power | C:E^i | GMT Fatal Error: No SI/US keyword in GMT configuration file (FONT_LABEL = 12p,Helvetica,black )

This is strange to me, because a few weeks ago I was able to run the example script successfully.

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rzinke commented 4 years ago

Yes, in the Relax folder I first ran $ source setup.sh and it reported "Ready to run Relax." Here is my path /Users/rzinke/Relax:/Users/rzinke/Relax/util:/Users/rzinke/Relax:/Users/rzinke/Relax/util:/anaconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin

sbarbot commented 4 years ago

Check LD_LIBRARY_PATH. You may have another gmt version libraries in there. S.

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 9:57:03 PM To: geodynamics/relax relax@noreply.github.com Cc: Sylvain Barbot sbarbot@usc.edu; Mention mention@noreply.github.com Subject: Re: [geodynamics/relax] GMT fatal error (#1)

Yes, in the Relax folder I first ran $ source setup.sh and it reported "Ready to run Relax." Here is my path /Users/rzinke/Relax:/Users/rzinke/Relax/util:/Users/rzinke/Relax:/Users/rzinke/Relax/util:/anaconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin

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rzinke commented 4 years ago

Hm, using $ echo $LD_LIBRARY_PATH? How do I check it?

Thanks

sbarbot commented 4 years ago

Yes, like that. S.

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 10:02 PM To: geodynamics/relax Cc: Sylvain Barbot; Mention Subject: Re: [geodynamics/relax] GMT fatal error (#1)

Hm, using $ echo $LD_LIBRARY_PATH? How do I check it?

Thanks

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rzinke commented 4 years ago

MT-109587:RobzTests rzinke$ echo $LD_LIBRARY_PATH

returns nothing (blank)

sbarbot commented 4 years ago

Have you run

source ./setup.sh

?

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 10:23 PM To: geodynamics/relax Cc: Sylvain Barbot; Mention Subject: Re: [geodynamics/relax] GMT fatal error (#1)

MT-109587:RobzTests rzinke$ echo $LD_LIBRARY_PATH

returns nothing (blank)

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rzinke commented 4 years ago

Yes, and received the message "Ready to run Relax"

rzinke commented 4 years ago

I'll take a look tomorrow and try rebooting some things.

sbarbot commented 4 years ago

What about

echo GMT_SHAREDIR echo PROJ_LIB

?

From: rzinke notifications@github.com Sent: Monday, June 22, 2020 10:48 PM To: geodynamics/relax Cc: Sylvain Barbot; Mention Subject: Re: [geodynamics/relax] GMT fatal error (#1)

I'll take a look tomorrow and try rebooting some things.

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rzinke commented 4 years ago

MT-109587:Relax rzinke$ echo $GMT_SHAREDIR /Users/rzinke/Relax/share

MT-109587:Relax rzinke$ echo $PROJ_LIB /Users/rzinke/Relax/share

rzinke commented 4 years ago

Here is a somewhat related problem I am having. I tried using Relax on our server, using the GitHub repo. I did: git clone https://github.com/geodynamics/relax.git cd relax source setup.sh

but I got the following error message: Error!

Source this script from the top-level Relax directory:

cd [directory containing 'setup.sh']
source setup.sh

I don't understand because I am already in the directory containing the setup.sh file, i.e., /u/sar-r2/rzinke/relax

sbarbot commented 4 years ago

Hi Rob,

I you're running binaries built from source, you shouldn't use the ./setup.sh script. You should simply update the LD_LIBRARY_PATH and PATH environment variables. There are several examples in the INSTALL files about how to do this for various systems. If you're unfamiliar with the procedure, please ask your system admin. This is pretty standard.

Cheers, Sylvain

From: rzinke notifications@github.com Sent: Tuesday, June 23, 2020 1:56 PM To: geodynamics/relax Cc: Sylvain Barbot; Mention Subject: Re: [geodynamics/relax] GMT fatal error (#1)

Here is a somewhat related problem I am having. I tried using Relax on our server, using the GitHub repo. I did: git clone https://github.com/geodynamics/relax.githttps://urldefense.com/v3/__https://github.com/geodynamics/relax.git__;!!LIr3w8kk_Xxm!5fnCe2n_HeJ2nUG5YEJWQvLUNiP03VoQnVjl1WN98_o7287u_wjeWVUFSERXxRg$ cd relax source setup.sh

but I got the following error message: Error!

Source this script from the top-level Relax directory:

cd [directory containing 'setup.sh'] source setup.sh

I don't understand because I am already in the directory containing the setup.sh file, i.e., /u/sar-r2/rzinke/relax

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rzinke commented 4 years ago

Okay, I removed the old version of Relax and replaced it with a fresh copy. Now the examples work.

Something must have gotten mangled up wrt GMT, possibly in the /Users/rzinke/Relax/RobzTests/gmt.conf or /Users/rzinke/Relax/share/gmt.conf files (?). I am not sure.

Thanks for the help, @sbarbot!