Open ajuava opened 4 years ago
Use blastx to predict protein function from amino acid sequence by comparing to other known proteins using homology and preserved domains, im pretty sure you can also install it as a module in python (https://blast.ncbi.nlm.nih.gov/Blast.cgi)
Use clustal Ω to align multiple amino acid or dna sequences (https://www.ebi.ac.uk/Tools/msa/clustalo/)
Also can use jpred to try and infer secondary protein structure (http://www.compbio.dundee.ac.uk/jpred/)
https://chemrxiv.org/articles/COVID-19_Disease_ORF8_and_Surface_Glycoprotein_Inhibit_Heme_Metabolism_by_Binding_to_Porphyrin/11938173
may give some hint
erturkkadir
commented
4 years ago
Use blastx to predict protein function from amino acid sequence by comparing to other known proteins using homology and preserved domains, im pretty sure you can also install it as a module in python (https://blast.ncbi.nlm.nih.gov/Blast.cgi)
Use clustal Ω to align multiple amino acid or dna sequences (https://www.ebi.ac.uk/Tools/msa/clustalo/)
Also can use jpred to try and infer secondary protein structure (http://www.compbio.dundee.ac.uk/jpred/)