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geopandas / pyogrio

Vectorized vector I/O using OGR
https://pyogrio.readthedocs.io
MIT License
259 stars 22 forks source link

BLD/RLS: update wheels to include GDAL 3.7.2 #298

Closed jorisvandenbossche closed 9 months ago

jorisvandenbossche commented 9 months ago

Closes #295

Like https://github.com/geopandas/pyogrio/pull/248, now updating to GDAL 3.7.2 (https://github.com/microsoft/vcpkg/commit/62988594de235334bc83609a060773eb2c8a8478)

jorisvandenbossche commented 9 months ago

Reproducing the linux build failure locally, this is the logs vcpkg produces to open an issue about it:

Package: gdal[core,curl,expat,geos,jpeg,lerc,png,qhull,recommended-features,sqlite3]:x64-linux-dynamic -> 3.7.2

Host Environment

To Reproduce

vcpkg install Failure logs

-- Downloading https://github.com/OSGeo/gdal/archive/v3.7.2.tar.gz -> OSGeo-gdal-v3.7.2.tar.gz...
-- Extracting source /opt/vcpkg/downloads/OSGeo-gdal-v3.7.2.tar.gz
-- Applying patch find-link-libraries.patch
-- Applying patch fix-gdal-target-interfaces.patch
-- Applying patch libkml.patch
-- Applying patch fix-jpeg.patch
-- Using source at /opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean
-- Configuring x64-linux-dynamic
-- Building x64-linux-dynamic-rel
CMake Error at scripts/cmake/vcpkg_execute_build_process.cmake:134 (message):
    Command failed: /opt/_internal/pipx/venvs/cmake/lib/python3.10/site-packages/cmake/data/bin/cmake --build . --config Release --target install -- -v -j9
    Working Directory: /opt/vcpkg/buildtrees/gdal/x64-linux-dynamic-rel
    See logs for more information:
      /opt/vcpkg/buildtrees/gdal/install-x64-linux-dynamic-rel-out.log

Call Stack (most recent call first):
  installed/x64-linux/share/vcpkg-cmake/vcpkg_cmake_build.cmake:74 (vcpkg_execute_build_process)
  installed/x64-linux/share/vcpkg-cmake/vcpkg_cmake_install.cmake:16 (vcpkg_cmake_build)
  buildtrees/versioning_/versions/gdal/d01864aaa21a85e1e8f7bb6748d607e953c52e77/portfile.cmake:104 (vcpkg_cmake_install)
  scripts/ports.cmake:147 (include)
/opt/vcpkg/buildtrees/gdal/install-x64-linux-dynamic-rel-out.log ``` Change Dir: '/opt/vcpkg/buildtrees/gdal/x64-linux-dynamic-rel' Run Build Command(s): /opt/vcpkg/downloads/tools/ninja/1.10.2-linux/ninja -v -v -j9 install [1/1030] /opt/rh/devtoolset-10/root/usr/bin/c++ -DCURL_STATICLIB -DDONT_DEPRECATE_SPRINTF -DENABLE_DEFLATE64 -DENABLE_UFFD -DGDAL_COMPILATION -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_CURL -DHAVE_LIBZ -DHAVE_PREAD64 -DHAVE_SSE_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME -DHAVE_ZLIB -DHAVE_ZLIB_H -DINST_DATA=\"/opt/vcpkg/packages/gdal_x64-linux-dynamic/share/gdal\" -DSYSCONFDIR=\"/etc/opt/vcpkg/packages/gdal_x64-linux-dynamic\" -DZIP_SUPPORT -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/port -I/opt/vcpkg/buildtrees/gdal/x64-linux-dynamic-rel/port -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/frmts/zlib/contrib/infback9 -I/opt/vcpkg/installed/x64-linux-dynamic/include/json-c -I/opt/vcpkg/installed/x64-linux-dynamic/include -fPIC -fvisibility=hidden -O3 -DNDEBUG -std=gnu++11 -fPIC -Wall -Wextra -Winit-self -Wunused-parameter -Wmissing-declarations -Wlogical-op -Wshadow -Wmissing-include-dirs -Wformat -Werror=format-security -Wno-format-nonliteral -Werror=vla -Wno-clobbered -Wdate-time -Wnull-dereference -Wextra-semi -Wfloat-conversion -Wnon-virtual-dtor -Woverloaded-virtual -Wsuggest-override -fno-operator-names -Wzero-as-null-pointer-constant -Wold-style-cast -Weffc++ -MD -MT port/CMakeFiles/cpl.dir/cpl_atomic_ops.cpp.o -MF port/CMakeFiles/cpl.dir/cpl_atomic_ops.cpp.o.d -o port/CMakeFiles/cpl.dir/cpl_atomic_ops.cpp.o -c /opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/port/cpl_atomic_ops.cpp [2/1030] /opt/rh/devtoolset-10/root/usr/bin/c++ -DCURL_STATICLIB -DDONT_DEPRECATE_SPRINTF -DENABLE_DEFLATE64 -DENABLE_UFFD -DGDAL_COMPILATION -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_CURL -DHAVE_LIBZ -DHAVE_PREAD64 -DHAVE_SSE_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME -DHAVE_ZLIB -DHAVE_ZLIB_H -DINST_DATA=\"/opt/vcpkg/packages/gdal_x64-linux-dynamic/share/gdal\" -DSYSCONFDIR=\"/etc/opt/vcpkg/packages/gdal_x64-linux-dynamic\" -DZIP_SUPPORT -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/port -I/opt/vcpkg/buildtrees/gdal/x64-linux-dynamic-rel/port -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/frmts/zlib/contrib/infback9 -I/opt/vcpkg/installed/x64-linux-dynamic/include/json-c -I/opt/vcpkg/installed/x64-linux-dynamic/include -fPIC -fvisibility=hidden -O3 -DNDEBUG -std=gnu++11 -fPIC -Wall -Wextra -Winit-self -Wunused-parameter -Wmissing-declarations -Wlogical-op -Wshadow -Wmissing-include-dirs -Wformat -Werror=format-security -Wno-format-nonliteral -Werror=vla -Wno-clobbered -Wdate-time -Wnull-dereference -Wextra-semi -Wfloat-conversion -Wnon-virtual-dtor -Woverloaded-virtual -Wsuggest-override -fno-operator-names -Wzero-as-null-pointer-constant -Wold-style-cast -Weffc++ -MD -MT port/CMakeFiles/cpl.dir/cpl_xml_validate.cpp.o -MF port/CMakeFiles/cpl.dir/cpl_xml_validate.cpp.o.d -o port/CMakeFiles/cpl.dir/cpl_xml_validate.cpp.o -c /opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/port/cpl_xml_validate.cpp ... Skipped 16 lines ... [19/1030] /opt/rh/devtoolset-10/root/usr/bin/c++ -DCURL_STATICLIB -DDONT_DEPRECATE_SPRINTF -DENABLE_DEFLATE64 -DENABLE_UFFD -DGDAL_COMPILATION -DHAVE_AVX_AT_COMPILE_TIME -DHAVE_CURL -DHAVE_LIBZ -DHAVE_PREAD64 -DHAVE_SSE_AT_COMPILE_TIME -DHAVE_SSSE3_AT_COMPILE_TIME -DHAVE_ZLIB -DHAVE_ZLIB_H -DINST_DATA=\"/opt/vcpkg/packages/gdal_x64-linux-dynamic/share/gdal\" -DSYSCONFDIR=\"/etc/opt/vcpkg/packages/gdal_x64-linux-dynamic\" -DZIP_SUPPORT -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/port -I/opt/vcpkg/buildtrees/gdal/x64-linux-dynamic-rel/port -I/opt/vcpkg/buildtrees/gdal/src/v3.7.2-79e9b709aa.clean/frmts/zlib/contrib/infback9 -I/opt/vcpkg/installed/x64-linux-dynamic/include/json-c -I/opt/vcpkg/installed/x64-linux-dynamic/include -fPIC -fvisibility=hidden -O3 -DNDEBUG -std=gnu++11 -fPIC -Wall -Wextra -Winit-self -Wunused-parameter -Wmissing-declarations -Wlogical-op -Wshadow -Wmissing-include-dirs -Wformat -Werror=format-security -Wno-format-nonliteral -Werror=vla -Wno-clobbered 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Additional context

vcpkg.json ``` { "name": "pyogrio", "version": "0.4.0", "dependencies": [ { "name": "gdal", "default-features": false, "features": [ "recommended-features", "curl", "geos" ] } ], "builtin-baseline": "62988594de235334bc83609a060773eb2c8a8478" } ```
jorisvandenbossche commented 9 months ago

The build error happens in frmts/zlib/contrib/infback9/minified_zutil.c:8, which was added to GDAL in 3.7 to support deflate64 zip files (https://github.com/OSGeo/gdal/pull/7014). My current understanding of the problem: this vendored code assumes a more recent zlib version than what we are using here to build with (it uses z_const, which was added in https://github.com/madler/zlib/commit/5ab9f47745fe9353291b217f705086b6070575d5, which maps to zlib 1.2.5.2). The custom port for zlib we use (https://github.com/geopandas/pyogrio/pull/57) is set to 1.2.5, but we can maybe try to "just" update that to 1.2.5.2 (that should be fine for manylinux, as that's the max version for manylinux2014 policy: https://github.com/pypa/auditwheel/blob/3636dad88d6168aa745684db9ea6a7c6df4d4484/src/auditwheel/policy/manylinux-policy.json#L83)

(another option would be to let GDAL use its internal zlib copy, but that is not enabled in vcpkg, so that would require finding a way to override that, and not sure if that's possible without a custom port of gdal where we just override that one option)

jorisvandenbossche commented 9 months ago

That seems to have worked! The only failures are two windows wheel test builds that regularly fail (segfault at cleanup, https://github.com/geopandas/pyogrio/issues/213)

brendan-ward commented 9 months ago

Thanks @jorisvandenbossche ! 💯