geopandas / scipy2018-geospatial-data

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GeoPandas errors, is there anybody know how to fix this problem? #21

Open chaoyanghe opened 5 years ago

chaoyanghe commented 5 years ago

ImportError Traceback (most recent call last)

in () 2 3 import pandas as pd ----> 4 import geopandas 5 6 pd.options.display.max_rows = 10 /anaconda3/lib/python3.7/site-packages/geopandas/__init__.py in () 2 from geopandas.geodataframe import GeoDataFrame 3 ----> 4 from geopandas.io.file import read_file 5 from geopandas.io.sql import read_postgis 6 from geopandas.tools import sjoin /anaconda3/lib/python3.7/site-packages/geopandas/io/file.py in () 1 import os 2 ----> 3 import fiona 4 import numpy as np 5 import six /anaconda3/lib/python3.7/site-packages/fiona/__init__.py in () 81 os.environ["PATH"] = os.environ["PATH"] + ";" + libdir 82 ---> 83 from fiona.collection import BytesCollection, Collection 84 from fiona.drvsupport import supported_drivers 85 from fiona.env import ensure_env_with_credentials, Env /anaconda3/lib/python3.7/site-packages/fiona/collection.py in () 7 8 from fiona import compat, vfs ----> 9 from fiona.ogrext import Iterator, ItemsIterator, KeysIterator 10 from fiona.ogrext import Session, WritingSession 11 from fiona.ogrext import ( ImportError: dlopen(/anaconda3/lib/python3.7/site-packages/fiona/ogrext.cpython-37m-darwin.so, 2): Library not loaded: @rpath/libkea.1.4.7.dylib Referenced from: /anaconda3/lib/libgdal.20.dylib Reason: image not found
jorisvandenbossche commented 5 years ago

@chaoyanghe you have a problem with the installation of fiona / gdal. Can you give more details how you installed geopandas and its dependencies? (and can you show the output of conda list ?)

zlqs1985 commented 5 years ago

I got a similar installation problem, conda install failed because fiona demand a python version beyond 3.5? My conda list is following.

λ conda list packages in environment at C:\Users\zhanglu\Anaconda3:

Name Version Build Channel _license 1.1 py35_1 defaults _nb_ext_conf 0.3.0 py35_0 defaults alabaster 0.7.9 py35_0 defaults anaconda custom py35_0 defaults anaconda-clean 1.0.0 py35_0 defaults anaconda-client 1.5.1 py35_0 defaults anaconda-navigator 1.3.1 py35_0 defaults argcomplete 1.0.0 py35_1 defaults astroid 1.4.7 py35_0 defaults astropy 1.2.1 np111py35_0 defaults babel 2.3.4 py35_0 defaults backports 1.0 py35_0 defaults beautifulsoup4 4.5.1 py35_0 defaults bitarray 0.8.1 py35_1 defaults blaze 0.10.1 py35_0 defaults bokeh 0.12.2 py35_0 defaults boto 2.42.0 py35_0 defaults bottleneck 1.1.0 np111py35_0 defaults bzip2 1.0.6 vc14_3 [vc14] defaults certifi 2016.2.28 py35_0 defaults cffi 1.7.0 py35_0 defaults chardet 3.0.4 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge chardet 3.0.4 chest 0.2.3 py35_0 defaults click 6.6 py35_0 defaults cloudpickle 0.2.1 py35_0 defaults clyent 1.2.2 py35_0 defaults colorama 0.3.7 py35_0 defaults comtypes 1.1.2 py35_0 defaults conda 4.5.4 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge conda-build 2.0.2 py35_0 defaults conda-env 2.6.0 0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge configobj 5.0.6 py35_0 defaults console_shortcut 0.1.1 py35_1 defaults contextlib2 0.5.3 py35_0 defaults cryptography 1.5 py35_0 defaults cssselect 1.0.1 py35_0 defaults curl 7.49.0 vc14_0 [vc14] defaults cycler 0.10.0 py35_0 defaults cython 0.24.1 py35_0 defaults cytoolz 0.8.0 py35_0 defaults dask 0.11.0 py35_0 defaults datashape 0.5.2 py35_0 defaults decorator 4.0.10 py35_0 defaults dill 0.2.5 py35_0 defaults distribute 0.7.3 docutils 0.12 py35_2 defaults dynd-python 0.7.2 py35_0 defaults entrypoints 0.2.2 py35_0 defaults enum34 1.1.6 et_xmlfile 1.0.1 py35_0 defaults fastcache 1.0.2 py35_1 defaults filelock 2.0.6 py35_0 defaults flask 0.11.1 py35_0 defaults flask-cors 2.1.2 py35_0 defaults freetype 2.5.5 vc14_1 [vc14] defaults get_terminal_size 1.0.0 py35_0 defaults gevent 1.1.2 py35_0 defaults graphviz 2.38.0 7 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge greenlet 0.4.10 py35_0 defaults h5py 2.6.0 np111py35_2 defaults h5py 2.7.0 hdf5 1.8.15.1 vc14_4 [vc14] defaults heapdict 1.0.0 py35_1 defaults icu 57.1 vc14_0 [vc14] defaults idna 2.1 py35_0 defaults imagesize 0.7.1 py35_0 defaults ipykernel 4.5.0 py35_0 defaults ipython 5.5.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge ipython_genutils 0.1.0 py35_0 defaults ipywidgets 5.2.2 py35_0 defaults itsdangerous 0.24 py35_0 defaults jdcal 1.2 py35_1 defaults jedi 0.9.0 py35_1 defaults jinja2 2.8 py35_1 defaults joblib 0.11 jpeg 8d vc14_2 [vc14] defaults jsonschema 2.5.1 py35_0 defaults jupyter 1.0.0 py35_3 defaults jupyter_client 4.4.0 py35_0 defaults jupyter_console 5.0.0 py35_0 defaults jupyter_contrib_core 0.3.3 py35_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge jupyter_contrib_nbextensions 0.4.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge jupyter_core 4.2.0 py35_0 defaults jupyter_highlight_selected_word 0.1.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge jupyter_latex_envs 1.3.8.2 py35_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge jupyter_nbextensions_configurator 0.4.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge jupyterthemes 0.18.3 py_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge lazy-object-proxy 1.2.1 py35_0 defaults lesscpy 0.12.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge libdynd 0.7.2 0 defaults libpng 1.6.22 vc14_0 [vc14] defaults libtiff 4.0.6 vc14_2 [vc14] defaults llvmlite 0.13.0 py35_0 defaults locket 0.2.0 py35_1 defaults lxml 3.6.4 py35_0 defaults markupsafe 0.23 py35_2 defaults matplotlib 1.5.3 np111py35_0 defaults menuinst 1.4.1 py35_0 defaults mistune 0.7.3 py35_0 defaults mkl 11.3.3 1 defaults mkl-service 1.1.2 py35_2 defaults mpmath 0.19 py35_1 defaults multipledispatch 0.4.8 py35_0 defaults nb_anacondacloud 1.2.0 py35_0 defaults nb_conda 2.0.0 py35_0 defaults nb_conda_kernels 2.0.0 py35_0 defaults nbconvert 4.2.0 py35_0 defaults nbformat 4.1.0 py35_0 defaults nbpresent 3.0.2 py35_0 defaults networkx 1.11 py35_0 defaults nltk 3.2.1 py35_0 defaults nose 1.3.7 py35_1 defaults notebook 4.2.3 py35_0 defaults numba 0.28.1 np111py35_0 defaults numexpr 2.6.1 np111py35_0 defaults numpy 1.11.1 py35_1 defaults numpydoc 0.7.0 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge odo 0.5.0 py35_1 defaults openpyxl 2.3.2 py35_0 defaults openssl 1.0.2j vc14_0 [vc14] defaults pandas 0.18.1 np111py35_0 defaults partd 0.3.6 py35_0 defaults path.py 8.2.1 py35_0 defaults pathlib2 2.1.0 py35_0 defaults patsy 0.4.1 py35_0 defaults PDF 1.0 pdfminer.six 20170720 pep8 1.7.0 py35_0 defaults pickleshare 0.7.4 py35_0 defaults pillow 3.3.1 py35_0 defaults pip 8.1.2 py35_0 defaults pip 9.0.1 pkginfo 1.3.2 py35_0 defaults ply 3.9 py35_0 defaults prompt_toolkit 1.0.15 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge psutil 4.3.1 py35_0 defaults py 1.4.31 py35_0 defaults pyasn1 0.1.9 py35_0 defaults pycodestyle 2.3.1 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge pycosat 0.6.3 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge pycparser 2.14 py35_1 defaults pycrypto 2.6.1 py35_4 defaults pycryptodome 3.4.6 pycurl 7.43.0 py35_0 defaults pydot 1.2.3 py_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge pydotplus 2.0.2 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge pyflakes 1.3.0 py35_0 defaults pygments 2.1.3 py35_0 defaults pylint 1.5.4 py35_1 defaults pymc3 3.1 PyNLPIR 0.5.2 pyopenssl 16.2.0 py35_0 defaults pyparsing 2.1.4 py35_0 defaults pyproj 1.9.5.1 py35_0 defaults pyqt 5.6.0 py35_0 defaults pysocks 1.6.6 py35_0 defaults pytables 3.2.2 np111py35_4 defaults pytest 2.9.2 py35_0 defaults python 3.5.2 0 defaults python-dateutil 2.5.3 py35_0 defaults pytz 2016.6.1 py35_0 defaults pywin32 220 py35_1 defaults pyyaml 3.12 py35_0 defaults pyzmq 15.4.0 py35_0 defaults qt 5.6.0 vc14_0 [vc14] defaults qtawesome 0.4.4 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge qtconsole 4.2.1 py35_2 defaults qtpy 1.3.1 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge quantecon 0.3.8.1 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge requests 2.13.0 py35_0 defaults rope 0.9.4 py35_1 defaults ruamel_yaml 0.11.14 py35_0 defaults scikit-image 0.12.3 np111py35_1 defaults scikit-learn 0.17.1 np111py35_1 defaults scipy 0.18.1 np111py35_0 defaults seaborn 0.8.1 setuptools 38.2.4 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge simplegeneric 0.8.1 py35_1 defaults singledispatch 3.4.0.3 py35_0 defaults sip 4.18 py35_0 defaults six 1.10.0 py35_0 defaults snowballstemmer 1.2.1 py35_0 defaults sockjs-tornado 1.0.3 py35_0 defaults sphinx 1.4.6 py35_0 defaults spyder 3.2.4 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge sqlalchemy 1.0.13 py35_0 defaults statsmodels 0.6.1 np111py35_1 defaults sympy 1.0 py35_0 defaults tabula-py 1.0.0 Theano 0.9.0 tk 8.5.18 vc14_0 [vc14] defaults toolz 0.8.0 py35_0 defaults tornado 4.4.1 py35_0 defaults tqdm 4.14.0 traitlets 4.3.0 py35_0 defaults unicodecsv 0.14.1 py35_0 defaults urllib3 1.21.1 py35_0 defaults vs2015_runtime 14.0.25123 0 defaults wcwidth 0.1.7 py35_0 defaults werkzeug 0.11.11 py35_0 defaults wheel 0.29.0 py35_0 defaults widgetsnbextension 1.2.6 py35_0 defaults win_inet_pton 1.0.1 py35_0 defaults win_unicode_console 0.5 py35_0 defaults wincertstore 0.2 py35_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge wrapt 1.10.6 py35_0 defaults xlrd 1.0.0 py35_0 defaults xlsxwriter 0.9.3 py35_0 defaults xlwings 0.10.0 py35_0 defaults xlwt 1.1.2 py35_0 defaults zlib 1.2.8 vc14_3 [vc14] defaults

jorisvandenbossche commented 5 years ago

@zlqs1985 can you show the output of the install command?