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georgeoshardo / SyMBac

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
https://doi.org/10.1186/s12915-022-01453-6
GNU General Public License v2.0
19 stars 9 forks source link

tifffile version #33

Closed kmpape closed 1 year ago

kmpape commented 1 year ago

Hi there,

I don't think that setup.py specifies a version for tifffile. With version 2021.10.12, I obtain an error from SyMBac.misc.misc_load_img:

TiffPage 0: TypeError: read_bytes() missing 3 required positional arguments: ‘dtype’, ‘count’, and ‘offsetsize’

After upgrading it to version 2023.2.3 things work fine.

georgeoshardo commented 1 year ago

Thank you, I have bumped the tifffile version in the latest commit.