georgeshirreff
commented
9 years ago Hi all,
I sent this to Hilmar. Are you happy with it?
George
---------- Forwarded message ---------- From: George Shirreff georgeshirreff@googlemail.com Date: 9 July 2015 at 12:45 Subject: Re: visuals for ISMB poster To: Hilmar Lapp hlapp@nescent.org
Hi Hilmar,
I'm sorry about the delay. Here's a skyline plot, is that ok? It's constructed from a set of growing, heterochronous trees simulated by our package and then plotted using the same. The black line is the median and the red lines the 2.5 and 97.5 %-iles. The y-axis is the effective population size multiplied by the generation time.
Here is the code used to generate it, not sure if you need to know that but it might be useful to have a record.
require(multiNe) growing_trees<-simulate.tree(n=100,N=100,args="-G 10 -T",sampling="hetero")$out conf.int <-Phylos2Skylines_anchor(trees=growing_trees,output_type="conf.int.plot",epsilon=0,xlab="Time")
Let me know if it's not quite right and I can tweak it.
George
On 8 July 2015 at 04:46, Hilmar Lapp hlapp@nescent.org wrote:
On Jul 7, 2015, at 11:34 PM, Hilmar Lapp hlapp@nescent.org wrote:
So, if you could send me a visual (or multiple ones) that would serve well to represent your team’s work on the poster, that’d be great, especially if you could do that by tomorrow (Tuesday) night.
Some of you may have noticed that this is an odd thing to say for a message sent Tuesday night. The reason is that I only realized now (by checking my spam folder - yes, Google will rate it’s own notices as spam) that the original that I sent earlier was rejected because I sent it from the wrong sender address. No wonder I got no response!
Anyway, apologies for the now not only short but I guess negative time notice ;) Things that would be particularly suitable are plots, such as those generated by the package or code you wrote at the hackathon.
Cheers,
-hilmar
Hilmar Lapp -:- informatics.nescent.org/wiki -:- lappland.io
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JuliaPalacios
rebzzy
Dear team! Did you see Hilmars email regarding some kind of visual output for his poster? My output is numbers only, so not particularly appealing. How about a skyline plot? Do you have one handy?
Hope all is well! C