georgiesamaha / configBuilder-nf

Nextflow config builder scripts for supported HPC infrastructures.
7 stars 1 forks source link

Rename infrastructure questions and functions, add improved question flow and user response feedback #13

Closed jfy133 closed 11 months ago

jfy133 commented 11 months ago

As I keep saying, I'm new to python, so some of the stuff I've done might not make sense code wise :sweat_smile:

This PR tries to begin updating the config building for a infrastructure profile, i.e. for setting schedulers, containers, module environments etc.

Namely:

Extras includes

Note that it crashes for me for the container system pickup... so will carry on with that next. Queues are complicated so I will leave that until the end :grimacing:

jfy133 commented 11 months ago

note this is just a start, and only modifies the infrastructure route. The pipeline one isn't working atm