search

geoschem / geos-chem-cloud

Run GEOS-Chem easily on AWS cloud
http://cloud.geos-chem.org
MIT License
39 stars 9 forks source link

no rule to make target mpbuild #31

Closed RajMLal closed 4 years ago

RajMLal commented 4 years ago

Hi Jiawei,

I am trying to run a geosfp_2x2.5_standard run on AWS. I've followed the instructions given here (https://cloud-gc.readthedocs.io/en/latest/chapter02_beginner-tutorial/research-workflow.html#get-source-code-and-checkout-model-version) including making a GC directory, downloading the source code and Unit Tester, and changing the copyrundirs.input file with the appropriate information (GCGRID_root, data_root, etc.).

I went into the run directory and tried to compile (make realclean worked, make -j4 mpbuild NC_Diag gave an error).

Do you have any thoughts why this may have happened?

Best, Raj mpbuild error

JiaweiZhuang commented 4 years ago

Which model version do you use? Did you checkout the proper version by git checkout 12.1.0, for both source code and unit tester?

yantosca commented 4 years ago

If you are using the 12.6.0 AMI, you can use “make -j4 build”. That was changed in I think 12.4.0 and higher. Sorry about that, I did not get around to updating the doc yet (we are all a bit slammed here this week).

Get Outlook for iOShttps://aka.ms/o0ukef

From: Jiawei Zhuang notifications@github.com Sent: Wednesday, October 30, 2019 8:15:06 PM To: geoschem/geos-chem-cloud geos-chem-cloud@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: Re: [geoschem/geos-chem-cloud] no rule to make target mpbuild (#31)

Which model version do you use? Did you checkout the proper version by git checkout 12.1.0, for both source code and unit tester?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_geoschem_geos-2Dchem-2Dcloud_issues_31-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DABM3T2FFXGJHI6BYCFKYAIDQRIPQVA5CNFSM4JHB5KU2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECWFJ6Q-23issuecomment-2D548164858&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=XTJBopAzwSsAgEljIk6g1TdJEZxb_bVLEjVNpBxfBIw&m=fW-skIF3gIZMITLEDgNdGqxcIrrVVWLAplqyo-Yq-ew&s=huC1Wpd-nuFeVM7YECgftMN32xw35_V89vnqKaw1RuQ&e=, or unsubscribehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ABM3T2FAYZTLGRBEEA54X6TQRIPQVANCNFSM4JHB5KUQ&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=XTJBopAzwSsAgEljIk6g1TdJEZxb_bVLEjVNpBxfBIw&m=fW-skIF3gIZMITLEDgNdGqxcIrrVVWLAplqyo-Yq-ew&s=SHdnbLsFa3S9Tt_QUw0TW9BMpoCNKnziCbF_DlCn2qw&e=.

RajMLal commented 4 years ago

Thank you Jiawei and Bob!

The "make -j4 build" command works for me and the code is compiling.

~Raj

JiaweiZhuang commented 4 years ago

Glad to see this!

yantosca commented 4 years ago

Also, you can always type “make help” for a list of compilation options.

Get Outlook for iOShttps://aka.ms/o0ukef

From: Jiawei Zhuang notifications@github.com Sent: Thursday, October 31, 2019 9:33:43 AM To: geoschem/geos-chem-cloud geos-chem-cloud@noreply.github.com Cc: Yantosca, Robert M. yantosca@seas.harvard.edu; Comment comment@noreply.github.com Subject: Re: [geoschem/geos-chem-cloud] no rule to make target mpbuild (#31)

Glad to see this!

— You are receiving this because you commented. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_geoschem_geos-2Dchem-2Dcloud_issues_31-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DABM3T2DC5PQW57FJVIVDZDTQRLNDPA5CNFSM4JHB5KU2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECXZDTY-23issuecomment-2D548377039&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=XTJBopAzwSsAgEljIk6g1TdJEZxb_bVLEjVNpBxfBIw&m=vKRCejPeEPAqS1mQMeegxcusnqqlbEOqmdHYkYmgIfs&s=mwVZw2P6-GQ4Kj_fY0NH90BGBr6Wybe1achsgZ5-_sU&e=, or unsubscribehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_ABM3T2FDUOIW37F6CICRSFLQRLNDPANCNFSM4JHB5KUQ&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=XTJBopAzwSsAgEljIk6g1TdJEZxb_bVLEjVNpBxfBIw&m=vKRCejPeEPAqS1mQMeegxcusnqqlbEOqmdHYkYmgIfs&s=KUPgVxhQQVSnjUE8BoEqXvXL_5_UOhmpdGW25ecqIHw&e=.

lizziel commented 4 years ago

Hi Raj,

What version of GEOS-Chem are you using? In newer versions of GEOS-Chem the build commands have changed. Type ‘make help’ to see the options. You may need to use build rather than mpbuild.

Best, Lizzie

-- Lizzie Lundgren Senior Scientific Programmer GEOS-Chem Support Team geos-chem-support@g.harvard.edumailto:geos-chem-support@g.harvard.edu

Please direct all GEOS-Chem support emails to the entire GEOS-Chem Support Teamhttp://wiki.geos-chem.org/GEOS-Chem_Support_Team. If you are reporting a bug, please create an issue on GitHubhttps://github.com/geoschem/.

From: RajMLal notifications@github.com Reply-To: geoschem/geos-chem-cloud reply@reply.github.com Date: Wednesday, October 30, 2019 at 7:55 PM To: geoschem/geos-chem-cloud geos-chem-cloud@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [geoschem/geos-chem-cloud] no rule to make target mpbuild (#31)

Hi Jiawei,

I am trying to run a geosfp_2x2.5_standard run on AWS. I've followed the instructions given here (https://cloud-gc.readthedocs.io/en/latest/chapter02_beginner-tutorial/research-workflow.html#get-source-code-and-checkout-model-versionhttps://urldefense.proofpoint.com/v2/url?u=https-3A__cloud-2Dgc.readthedocs.io_en_latest_chapter02-5Fbeginner-2Dtutorial_research-2Dworkflow.html-23get-2Dsource-2Dcode-2Dand-2Dcheckout-2Dmodel-2Dversion&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=xyVOGV-4mAPz62S8RZON4khwZesGKcGg2_BHL4y5NjQ&m=mIqQPIUGGaUoZjGqxkCAPMGs7WqKwQ7FdbYMfyHRfFA&s=96yx9VdcvusjhC-Pq5tMasRyy1tfk-r9oOjjHcwqwX4&e=) including making a GC directory, downloading the source code and Unit Tester, and changing the copyrundirs.input file with the appropriate information (GCGRID_root, data_root, etc.).

I went into the run directory and tried to compile (make realclean worked, make -j4 mpbuild NC_Diag gave an error).

Do you have any thoughts why this may have happened?

Best, Raj [Image removed by sender. mpbuild error]https://urldefense.proofpoint.com/v2/url?u=https-3A__user-2Dimages.githubusercontent.com_57201024_67907687-2D28fa6f00-2Dfb4f-2D11e9-2D8543-2D0368594c336a.png&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=xyVOGV-4mAPz62S8RZON4khwZesGKcGg2_BHL4y5NjQ&m=mIqQPIUGGaUoZjGqxkCAPMGs7WqKwQ7FdbYMfyHRfFA&s=w0ummcRQlM0TfgOgLqvW73ELmrfXWW5ra9DA0nHj0s4&e=

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHubhttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_geoschem_geos-2Dchem-2Dcloud_issues_31-3Femail-5Fsource-3Dnotifications-26email-5Ftoken-3DAAE7FK5UUJFY6FTEEGQYFG3QRINFZA5CNFSM4JHB5KU2YY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HVTD64A&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=xyVOGV-4mAPz62S8RZON4khwZesGKcGg2_BHL4y5NjQ&m=mIqQPIUGGaUoZjGqxkCAPMGs7WqKwQ7FdbYMfyHRfFA&s=fv3smekBLXqcVRzB3-HyLgh_WD8UXNAHPgcPIa_T6m8&e=, or unsubscribehttps://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_notifications_unsubscribe-2Dauth_AAE7FKZQ3COT55FE5P2I3VLQRINFZANCNFSM4JHB5KUQ&d=DwMCaQ&c=WO-RGvefibhHBZq3fL85hQ&r=xyVOGV-4mAPz62S8RZON4khwZesGKcGg2_BHL4y5NjQ&m=mIqQPIUGGaUoZjGqxkCAPMGs7WqKwQ7FdbYMfyHRfFA&s=ZEo5yUvNBpWGLf3QCPHpzPEkZd_ESkEUeVxhw_Vih4E&e=.

lizziel commented 4 years ago

Sorry all, I didn't see the rest of the thread before I just replied.