[BUG/ISSUE] Dryrun error in GEOS-Chem 12.7.0 on c5.4xlarge

yuexuyan commented 4 years ago

Describe the issue

dryrun error in GEOSChem 12.7.0 geosfp_2x2.5_CO2 simulation on a c5.4xlrge AWS instance

To Reproduce

Include the steps that must be done in order to reproduce the observed behavior:

commands

cd ~/tutorial/UT/per/CopyRunDirs.input
vim CopyRunDirs.input (select geosfp_2x2.5_CO2 simulation and set time)
./gcCopyRunDirs
cd ~/tutorial/geosfp_2x25_CO2
vim HEMCO_Config.rc (turn GFED and FINN off),
vim input.geos (set latitude & longitude and turn on plane flt diag)
vim HISTORY.rc (set the frequency and duration of the Restart COLLECTION and the CO2 COLLECTION ; change the SpeciesConc COLLECTION to ALL)
make realclean
make -j16 build
./geos --dryrun > log.dryrun

Error messages:

At line 1027 of file input_mod.F
Fortran runtime error: Expected INTEGER for item 1 in formatted transfer, got REAL
(i10)
 ^

Error termination. Backtrace:

#0  0x14c3441e820b in require_type
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:1328
#1  0x14c3441eb27d in require_type
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:1320
#2  0x14c3441eb27d in formatted_transfer_scalar_write
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:1945
#3  0x14c3441eb64b in formatted_transfer
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:2335
#4  0x14c3441e7ee5 in wrap_scalar_transfer
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:2369
#5  0x14c3441e7ee5 in wrap_scalar_transfer
        at /tmp/ubuntu/spack-stage/spack-stage-gcc-9.2.0-ss6lvrx5xrdw2fvz537f7alyak3cym2x/spack-src/libgfortran/io/transfer.c:2346
#6  0x4c56ef in read_grid_menu
        at /home/ubuntu/tutorial/Code.GC-classic/GeosCore/input_mod.F:1027
#7  0x4cb941 in __input_mod_MOD_read_input_file
        at /home/ubuntu/tutorial/Code.GC-classic/GeosCore/input_mod.F:174
#8  0x48f56c in geos_chem
        at /home/ubuntu/tutorial/Code.GC-classic/GeosCore/main.F:386
#9  0x4033c6 in ???
#10  0x14c342f8eb96 in ???
#11  0x4033f9 in ???
#12  0xffffffffffffffff in ???

Required information

Please include the following:

GEOS-Chem version you are using [12.7.0]
Compiler version that you are using [gfortran 9.2.0]
netCDF and netCDF-Fortran library version: netcdf-c@4.7.3; netcdf-fortran@4.5.2
Computational environment [e.g. a cluster, or the AWS cloud]
The Amazon Machine Image (AMI) ID that you used
Are you using "out of the box" code, or have you made modifications? no

Input and log files to attach

CopyRunDirs.input.txt HEMCO_Config.rc.txt HISTORY.rc.txt input.geos.txt lastbuild.txt log.dryrun.txt

The lastbuild file
The input.geos file
The HEMCO_Config.rc file
The GEOS-Chem "Classic" log file
The HEMCO.log file

yantosca commented 4 years ago

Thanks for writing. I think I see the issue. Your grid definition is:

%%% GRID MENU %%%       :
Grid resolution         : 2.0x2.5
Longitude min/max       : 110.0 -160.0
Latitude  min/max       :  -47.0  30.0
 Half-sized polar boxes?: T
Number of levels        : 47
Nested grid simulation? : F
 Buffer zone (N S E W ) :  0  0  0  0

But this is tripping an error because the min longitude is greater than the max longitude. This would have generated an error message but apparently there is a Fortran Format error in the conversion of number to string.

I don't think that FlexGrid can yet handle wrapping around the date line gracefully. You can try another grid definition.

yantosca commented 4 years ago

I will close out this issue. Feel free to reopen.

geoschem / geos-chem-cloud