geoschem / geos-chem

GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science routines, run directory generation scripts, and interface code. This repository is used as a submodule within the GCClassic and GCHP wrappers, as well as in other modeling contexts (external ESMs).
http://geos-chem.org
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[BUG/ISSUE] GEOS-CHEM demo issue #152

Closed yantosca closed 4 years ago

yantosca commented 4 years ago

Report a GEOS-Chem bug or technical issue

Describe the bug

My code died 3 hours into a run, but it should have run for 24 hours.

To Reproduce

Include the steps that must be done in order to reproduce the observed behavior:

Compilation commands

  1. make -j4 build

Run commands

  1. ./geos > log

Expected behavior

The run should have completed normally.

Error messages

This is output from my code

GEOS-CHEM SIMULATION ENDED

This is Fortran code

DO I = 1, 100
   PRINT*, I
ENDDO

This is python code

import xarray as xr
ds = xr.open_dataset('myfile.nc')

Here is a permalink: https://github.com/geoschem/geos-chem/blob/3e0b07cb4e4b13e3c5407dc581fa03dbbd1e7f41/GeosCore/chemistry_mod.F90#L344-L362

Required information

Please include the following:

Input and log files to attach

Here is a log file:
gc_dryrun.log.txt

Here is a screenshot: screenshot

Additional context

Include any other context about the problem here.

yantosca commented 4 years ago

This was the issue I created for the GEOS-Chem youtube video: Creating a GEOS-Chem issue with Github.