geoschem / geos-chem

GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science routines, run directory generation scripts, and interface code. This repository is used as a submodule within the GCClassic and GCHP wrappers, as well as in other modeling contexts (external ESMs).
http://geos-chem.org
Other
164 stars 156 forks source link

[BUG/ISSUE] NetCDF: Index exceeds dimension bound #1566

Closed TylerElgiar closed 1 year ago

TylerElgiar commented 1 year ago

What institution are you from?

Please tell us what institution you are from. Utah State University

Description of the problem

Describe your problem here. Describe the steps to reproduce the problem here, if possible. I have been trying to run a 025x03125 resolution model. I have ran an almost identical model in the past, only this run is for a different time period, and I receive the following error:

In Ncrd_3d_R4 #2:  NetCDF: Index exceeds dimension bound
     65536       133

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

Code stopped from DO_ERR_OUT (in module NcdfUtil/m_do_err_out.F90) 

This is an error that was encountered in one of the netCDF I/O modules,
which indicates an error in writing to or reading from a netCDF file!

I have not encountered this error in my previous runs, and I'm not quite sure how to address it.

Description of troubleshooting performed

Describe any troubleshooting that you have already performed here. Also include any leads or suspicions here.

GEOS-Chem version

Enter your GEOS-Chem version here. 12.8.0

Description of modifications

Describe your modifications here.

Log files

Software versions

yantosca commented 1 year ago

Thanks for writing @TylerElgiar. This can indicate that one of the netCDF files that you have on disk is corrupted. From the log file output, can you determine which file is being read?

Usually the solution is to re-download the file from the WashU archive and try again.

yantosca commented 1 year ago

Also tagging @Jourdan-He and @SaptSinha for reference.

TylerElgiar commented 1 year ago

I deleted my restart file and copied form another run. The model appears to be running now. Thank you for your help! I will let you know if there are any further issues.

-Tyler On Wednesday, December 14, 2022, 11:29:35 AM MST, Bob Yantosca @.***> wrote:

Thanks for writing @TylerElgiar. This can indicate that one of the netCDF files that you have on disk is corrupted. From the log file output, can you determine which file is being read?

Usually the solution is to re-download the file from the WashU archive and try again.

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

yantosca commented 1 year ago

No problem @TylerElgia! Write us with any problems or issues you encounter. Glad it's all working.