pkufubo
commented
1 year ago my sbatch script.
#!/bin/bash
#SBATCH -J FB_GC
#SBATCH -p C032M0128G
#SBATCH --qos=high
#SBATCH -N 1
#SBATCH -n 32
#SBATCH -o log.%j
#SBATCH -e log.%j
#SBATCH --mail-type=END
#SBATCH --mail-user=pkufubo@pku.edu.cn
#SBATCH -o job.%j.out
ulimit -s unlimited
export OMP_STACKSIZE=1G
export OMP_NUM_THREADS=64
module purge
module load intel/2013.1
module load cmake/3.16.0
module load impi/2017.1
module load netcdf/c/4.6.1-intel-2013.1
module load netcdf/fortran/4.4.4-intel-2013.1
module load netcdf/4.4.1-intel-2013.0
module load hdf5/1.8.19-intel-2013.1
module load gcc/7.2.0
#modify by user
#srun -N 1 -n $OMP_NUM_THREADS -t 30-24:00 -p cpu_single ./gcclassic >> GC.log
mpirun -n 1 -env OMP_NUM_THREADS=64 ./gcclassic >> GC.log
yantosca
Name and Institution (Required)
Name: Bo Fu Institution: Peking University
Confirm you have reviewed the following documentation
Description of your issue or question
Please provide as much detail as possible. Always include the GCClassic version number and any relevant configuration and log files.
GCClassic version number: 14.0.1 Hello. I am running CH4 simulation with GCAP data driving. However, I met an error like this (Error in `./gcclassic': double free or corruption (!prev)). NC outputs like GEOSChem.CH4.20050701_0000z.nc4 can be seen in OutputDir, but the time axis is 0. I don't change any source code and config files. I just download the Extdata with download_data.py and submit to the HPC of Peking University. I don't know why there is this bug. Thanks for your supports in advance!
geoschem_config.yml