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geoschem / geos-chem

GEOS-Chem "Science Codebase" repository. Contains GEOS-Chem science routines, run directory generation scripts, and interface code. This repository is used as a submodule within the GCClassic and GCHP wrappers, as well as in other modeling contexts (external ESMs).
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[QUESTION] Could not locate the ExtData folder when using dryrun #420

Closed xpye98 closed 4 years ago

xpye98 commented 4 years ago

Ask a question about GEOS-Chem:

I am using dry-run option to download HEMCO data needed. The issue is I always encounter such an error: ValueError: Could not locate the ExtData folder in your local disk space! I am sure that my ExtData path settings in HEMCO_Config.rc and input.geos are right. Does it have anything to do with python version?

msulprizio commented 4 years ago

Please see related issue https://github.com/geoschem/geos-chem/issues/411.

xpye98 commented 4 years ago

Please see related issue #441

Thanks for replying, but I don't think we share the same problem.

Here, I can generate rundirs by running ./gcCopyRunDirs. Also, I have compiled and generated log.dryrun file. The problem occurs when I run ./download_data.py log.dryrun --cc

To be clear, here are my input.geos and HEMCO_Config.rc files related to my ExtData path image image

msulprizio commented 4 years ago

What version of python are you using? Can you provide the complete output when you execute ./download_data.py log.dryrun --cc. Could you also copy your log.dryrun file here?

xpye98 commented 4 years ago

I am using python3.8.0-gcc-4.8.5-anaconda

The complete error message is: Traceback (most recent call last): File "./download_data.py", line 598, in main() File "./download_data.py", line 594, in main download_the_data(parse_args()) File "./download_data.py", line 510, in download_the_data paths = extract_pathnames_from_log(args["dryrun_log"]) File "./download_data.py", line 129, in extract_pathnames_from_log raise ValueError(msg) ValueError: Could not locate the ExtData folder in your local disk space!

The log.dryrun file is: (I renamed it to upload here) dryrun.log

Thanks a lot!

msulprizio commented 4 years ago

Your python environment should be fine according to the comments in download_data.py:

Remarks:
--------
    (1) This script only requires the "os", "sys", and "subprocess"
        packages, which are core Python.  Therefore, this script can
        be shipped with GEOS-Chem run directories.  It only requires
        Python 3 and not a full Anaconda/Miniconda environment (but
        you can run in an Anaconda environment if you have one).

Could you try adding some debug print statements to download_data.py at this location:

    # Find the local data directory prefix (path to ExtData)
    local_prefix = ""
    for path in found + missing:
        print("Debug: Checking path {}".format(path))  #<--- added for debug
        if "ExtData" in path:
            index = path.find("ExtData")
            local_prefix = path[:index]
            break

and attach the output here?That could tell us which file is causing the issues.

xpye98 commented 4 years ago

Hi msulprizio, I found the reason. The error is that the "D" of ExtData in my local path is lower case. What a rookie mistake! Thanks a lot! I will close the issue now.

msulprizio commented 4 years ago

Glad you figured it out! Thanks for posting the solution.

SLF2265127725 commented 2 years ago

Hello, I encountered the same question. So, how to deal with it? Thank you

SonofCeasar commented 1 year ago

After run "./download_data.py log.dryrun washu" and adding some debug print statements to download_data.py The error message is： Debug: Checking path ./HEMCO_Config.rc Debug: Checking path ./HEMCO_Config.rc.gmao_metfields Debug: Checking path ./HEMCO_Diagn.rc Debug: Checking path ./HISTORY.rc Debug: Checking path ./geoschem_config.yml Debug: Checking path ./HEMCO_restart.201907010000.nc Debug: Checking path ./Restarts/GEOSChem.Restart.20190701_0000z.nc4 Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/FJX_j2j.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/FJX_spec.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/dust.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/h2so4.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/jv_spec_mie.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/org.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/so4.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/soot.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/ssa.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FAST_JX/v2021-10/ssc.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/FastJ_201204/fastj.jv_atms_dat.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/Linoz_200910/Linoz_March2007.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/Olson_Land_Map_201203/Olson_2001_Drydep_Inputs.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/UCX_201403/NoonTime/Grid4x5/InitCFC_JN2O_01.dat Debug: Checking path /home/kaiwen/Downloads/ExtractData/CHEM_INPUTS/UCX_201403/NoonTime/Grid4x5/InitCFC_JN2O_02.dat 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/home/kaiwen/Downloads/ExtractData/HEMCO/OLSON_MAP/v2019-02/Olson_2001_Land_Type_Masks.025x025.generic.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/PARANOX/v2015-02/ship_plume_lut_02ms.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/PARANOX/v2015-02/ship_plume_lut_06ms.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/PARANOX/v2015-02/ship_plume_lut_10ms.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/PARANOX/v2015-02/ship_plume_lut_14ms.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/PARANOX/v2015-02/ship_plume_lut_18ms.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/RONO2/v2019-05/RONO2_seawater.geos.2x25.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/STRAT/v2015-01/Bry/GEOSCCM_Bry.200707.day.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/STRAT/v2015-01/Bry/GEOSCCM_Bry.200707.night.nc Debug: Checking path 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/home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190717.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190718.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190719.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190720.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190721.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190722.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190723.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190724.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190725.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190726.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190727.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190728.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190729.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190730.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/2019/07/so2_volcanic_emissions_Carns.20190731.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/VOLCANO/v2021-09/so2_volcanic_emissions_CARN_v202005.degassing_only.rc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/XIAO/v2014-09/C3H8_C2H6_ngas.geos.1x1.nc Debug: Checking path /home/kaiwen/Downloads/ExtractData/HEMCO/Yuan_XLAI/v2021-06/Yuan_proc_MODIS_XLAI.025x025.2019.nc Traceback (most recent call last): File "./download_data.py", line 662, in main() File "./download_data.py", line 658, in main download_the_data(parse_args()) File "./download_data.py", line 537, in download_the_data paths = extract_pathnames_from_log(args) File "./download_data.py", line 137, in extract_pathnames_from_log raise ValueError(msg) ValueError: Could not locate the ExtData folder in your local disk space!

I don't know if the name of the folder must be ExtData, as shown in the error message, currently my folder name is ExtractData Can you give me some suggestions? thanks