search

geoschem / integrated_methane_inversion

Integrated Methane Inversion workflow repository.
https://imi.readthedocs.org
MIT License
25 stars 19 forks source link

Running the IMI on a local cluster #180

Closed doudouwa002 closed 4 months ago

doudouwa002 commented 7 months ago

Name and Institution (Required)

Name: Chen Xiaodong Institution: University of Science and Technology of China

Description of your issue or question

I'm running the IMI.1.2.1 on my own local cluster, following the instruction from here: https://imi.readthedocs.io/en/latest/advanced/local-cluster.html#. When I was executing run_imi.sh , I got the error "GEOS-Chem environment file does not exist!".

According to the instruction, I need to create a environment fold, and "In this directory, we recommend storing any environment files needed to load the libraries for GEOS-Chem (e.g. fortran compiler, netcdf, openmpi, cmake), a conda environment file, and a copy of the IMI configuration file modified for your system. See the files in envs/Harvard-Cannon for examples."

I've finished modifying the config file and conda environment file.

But I don't know how to create a environment file for GEOS-Chem. I think that's the reason I got the error.

Could you please give me some instruction on how to create a environment file( or environment files?) for GEOS-Chem?

laestrada commented 7 months ago

Hi Chen,

Thanks for writing in. To run the IMI successfully your system needs to have the required dependencies to run the chemical transport model GEOS-Chem. To create and build the GEOS-Chem environment on your cluster I recommend following the documentation available here, which walks you through this using the package manager spack. Let us know if you run into issues.

-- Lucas Estrada

doudouwa002 commented 4 months ago

Hi Chen,

Thanks for writing in. To run the IMI successfully your system needs to have the required dependencies to run the chemical transport model GEOS-Chem. To create and build the GEOS-Chem environment on your cluster I recommend following the documentation available here, which walks you through this using the package manager spack. Let us know if you run into issues.

--

Lucas Estrada

Thank you Lucas! Now I have learned Linux bash and Fortran and I can understand you now!☺️ Thank you very much for your reply!💐