ljc-geo
commented
3 years ago Hi,
Sorry, I missed your email, did you resolve the compiling problem? I am not encountering these issues, so it must be related to your system. Let me know if you need more help?
Laura Connor Research Associate 813-334-0546 (mobile)
School of Geosciences University of South Florida Tampa, Florida 33620
From: W. M. Moreland notifications@github.com Sent: Tuesday, January 19, 2021 6:32 AM To: geoscience-community-codes/tephra2 tephra2@noreply.github.com Cc: Subscribed subscribed@noreply.github.com Subject: [geoscience-community-codes/tephra2] Unable to compile (#2)
Unfortunately I'm also getting an error when compiling tephra2. I am running Arch Linux (5.10.7-arch1-1). I've double-checked I have the gcc, openmpi, and gc dependencies installed. The output of the make attempt is:
cd inversion_src; make -f makefile.linux; cd ..
make[1]: Entering directory '/home/william/Documents/GitHub/tephra2/inversion_src'
mpicc -Wall -O3 -c ameoba.c
mpicc -Wall -O3 -c fit_tests.c
mpicc -Wall -O3 -c master.c
mpicc -Wall -O3 -c minimizing_func.c
mpicc -Wall -O3 -c slave.c
slave.c: In function ‘slave’:
slave.c:19:7: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
19 | int ret;
| ^~~mpicc -Wall -O3 -c tephra_inversion.c
mpicc -Wall -O3 -c ../common_src/tephra2_calc.c
mpicc -Wall -O3 -o tephra2-inversion_2020 ameoba.o fit_tests.o master.o minimizing_func.o slave.o tephra_inversion.o tephra2_calc.o -lm -lgc -ldl
/usr/bin/ld: fit_tests.o:(.bss+0x0): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: fit_tests.o:(.bss+0x8): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
/usr/bin/ld: master.o:(.bss+0x0): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: master.o:(.bss+0x8): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
/usr/bin/ld: minimizing_func.o:(.bss+0x18): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: minimizing_func.o:(.bss+0x20): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
/usr/bin/ld: slave.o:(.bss+0x0): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: slave.o:(.bss+0x8): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
/usr/bin/ld: tephra_inversion.o:(.bss+0x30): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: tephra_inversion.o:(.bss+0x38): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
/usr/bin/ld: tephra2_calc.o:(.bss+0x0): multiple definition of `pdf'; ameoba.o:(.bss+0x0): first defined here
/usr/bin/ld: tephra2_calc.o:(.bss+0x8): multiple definition of `fit'; ameoba.o:(.bss+0x8): first defined here
collect2: error: ld returned 1 exit status
make[1]: *** [makefile.linux:9: tephra2-inversion_2020] Error 1
make[1]: Leaving directory '/home/william/Documents/GitHub/tephra2/inversion_src'
cd forward_src; make -f makefile.linux; cd ..
make[1]: Entering directory '/home/william/Documents/GitHub/tephra2/forward_src'
gcc -Wall -O3 -c new_tephra.c
gcc -Wall -O3 -c ../common_src/tephra2_calc.c -lm -lgc -ldl
gcc -Wall -O3 -o tephra2_2020 new_tephra.o tephra2_calc.o -lm -lgc -ldl
/usr/bin/ld: tephra2_calc.o:(.bss+0x0): multiple definition of `pdf'; new_tephra.o:(.bss+0x20): first defined here
/usr/bin/ld: tephra2_calc.o:(.bss+0x8): multiple definition of `fit'; new_tephra.o:(.bss+0x28): first defined here
collect2: error: ld returned 1 exit status
make[1]: *** [makefile.linux:9: tephra2_2020] Error 1
make[1]: Leaving directory '/home/william/Documents/GitHub/tephra2/forward_src'
I can't tell what is causing the issue although it seems multiple definitions of things isn't ideal. Is anything apparent to anyone else? Cheers, Will
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wmoreland
Unfortunately I'm also getting an error when compiling tephra2. I am running Arch Linux (5.10.7-arch1-1). I've double-checked I have the gcc, openmpi, and gc dependencies installed. The output of the make attempt is:
I can't tell what is causing the issue although it seems multiple definitions of things isn't ideal. Is anything apparent to anyone else? Cheers, Will