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geospace-code / h5fortran

Lightweight HDF5 polymorphic Fortran: h5write() h5read()
https://geospace-code.github.io/h5fortran
BSD 3-Clause "New" or "Revised" License
100 stars 24 forks source link

[Bug]: PowerPC: test 5 - cast (Failed), few tests get disabled #41

Open barracuda156 opened 1 year ago

barracuda156 commented 1 year ago

What happened?

One test fails and a few are disabled. Could this be fixed?

--->  Testing h5fortran
Executing:  cd "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build" && ctest test 
Test project /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build
      Start  1: minimal
 1/27 Test  #1: minimal ..........................   Passed    0.06 sec
      Start  2: array
 2/27 Test  #2: array ............................   Passed    0.08 sec
      Start  3: attributes
 3/27 Test  #3: attributes .......................   Passed    0.07 sec
      Start  4: attributes_read
 4/27 Test  #4: attributes_read ..................***Not Run (Disabled)   0.00 sec
      Start  5: cast
 5/27 Test  #5: cast .............................***Failed    0.15 sec
      Start  6: deflate_write
 6/27 Test  #6: deflate_write ....................   Passed    0.26 sec
      Start  7: deflate_read
 7/27 Test  #7: deflate_read .....................   Passed    0.07 sec
      Start  8: deflate_props
 8/27 Test  #8: deflate_props ....................   Passed    0.06 sec
      Start  9: destructor
 9/27 Test  #9: destructor .......................   Passed    0.06 sec
      Start 10: exist
10/27 Test #10: exist ............................   Passed    0.07 sec
      Start 11: groups
11/27 Test #11: groups ...........................   Passed    0.06 sec
      Start 19: write
12/27 Test #19: write ............................   Passed    0.06 sec
      Start 12: layout
13/27 Test #12: layout ...........................   Passed    0.06 sec
      Start 13: lt
14/27 Test #13: lt ...............................   Passed    0.08 sec
      Start 14: scalar
15/27 Test #14: scalar ...........................   Passed    0.06 sec
      Start 15: shape
16/27 Test #15: shape ............................   Passed    0.06 sec
      Start 16: string
17/27 Test #16: string ...........................   Passed    0.06 sec
      Start 17: string_read
18/27 Test #17: string_read ......................***Not Run (Disabled)   0.00 sec
      Start 18: version
19/27 Test #18: version ..........................   Passed    0.05 sec
      Start 20: fail_read_size_mismatch
20/27 Test #20: fail_read_size_mismatch ..........   Passed    0.13 sec
      Start 21: fail_read_rank_mismatch
21/27 Test #21: fail_read_rank_mismatch ..........   Passed    0.13 sec
      Start 22: fail_nonexist_variable
22/27 Test #22: fail_nonexist_variable ...........   Passed    0.12 sec
      Start 23: fill
23/27 Test #23: fill .............................   Passed    0.06 sec
      Start 24: PythonAttributes
24/27 Test #24: PythonAttributes .................***Not Run (Disabled)   0.00 sec
      Start 25: PythonShape
25/27 Test #25: PythonShape ......................***Not Run (Disabled)   0.00 sec
      Start 26: PythonString
26/27 Test #26: PythonString .....................***Not Run (Disabled)   0.00 sec
      Start 27: h5ls
27/27 Test #27: h5ls .............................   Passed    0.07 sec

95% tests passed, 1 tests failed out of 22

Label Time Summary:
h5fortran    =   1.85 sec*proc (27 tests)
python       =   0.00 sec*proc (3 tests)
shaky        =   0.37 sec*proc (3 tests)

Total Test time (real) =   1.89 sec

The following tests did not run:
      4 - attributes_read (Disabled)
     17 - string_read (Disabled)
     24 - PythonAttributes (Disabled)
     25 - PythonShape (Disabled)
     26 - PythonString (Disabled)

The following tests FAILED:
      5 - cast (Failed)
Errors while running CTest

macOS 10.6, gcc 12.2.0, cmake 3.26, hdf5 @1.14.0_0+cxx+fortran+gfortran+hl+mpich+szip

Relevant log output ```shell Start testing: Apr 20 23:06 CST ---------------------------------------------------------- 1/27 Testing: minimal 1/27 Test: minimal Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_minimal" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "minimal" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- minimal: created test_minimal.h5 minimal: created variable minimal: closed test_minimal.h5 Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "minimal" end time: Apr 20 23:06 CST "minimal" time elapsed: 00:00:00 ---------------------------------------------------------- 2/27 Testing: array 2/27 Test: array Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_array" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "array" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- 1 2 3 4 2 4 6 8 3 6 9 12 4 8 12 16 PASSED: array write PASSED: slice read PASSED: create dataset and write slice 1D PASSED: overwrite slice 1d, stride=1 PASSED: overwrite slice 1d, no stride h5fortran:TRACE:create: deflate: /int32a-2d create and write slice 2d, stride=1 PASSED: slice write PASSED: array write / read Test time = 0.08 sec ---------------------------------------------------------- Test Passed. "array" end time: Apr 20 23:06 CST "array" time elapsed: 00:00:00 ---------------------------------------------------------- 3/27 Testing: attributes 3/27 Test: attributes Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_attributes" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "attributes" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- PASSED: HDF5 write attributes PASSED: HDF5 read attributes Test time = 0.07 sec ---------------------------------------------------------- Test Passed. "attributes" end time: Apr 20 23:06 CST "attributes" time elapsed: 00:00:00 ---------------------------------------------------------- 4/27 Testing: attributes_read 4/27 Test: attributes_read Command: "" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "attributes_read" start time: Output: ---------------------------------------------------------- Test time = 0.00 sec ---------------------------------------------------------- Test Passed. "attributes_read" end time: Apr 20 23:06 CST "attributes_read" time elapsed: 00:00:00 ---------------------------------------------------------- 5/27 Testing: cast 5/27 Test: cast Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_cast" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "cast" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: cast write OK: class method OK: dtype method ERROR STOP scalar cast int32 => int64 Error termination. Backtrace: #0 0xf19db Test time = 0.15 sec ---------------------------------------------------------- Test Failed. "cast" end time: Apr 20 23:06 CST "cast" time elapsed: 00:00:00 ---------------------------------------------------------- 6/27 Testing: deflate_write 6/27 Test: deflate_write Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_deflate_write" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "deflate_write" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: HDF5 write deflate #2 filesize (Mbytes): 0.27 compression ratio: 6.0 OK: HDF5 compress whole #3 file opened #3 written slice of A #3 filesize (Mbytes): 0.01 compression ratio: 18.7 OK: HDF5 compress slice Test time = 0.26 sec ---------------------------------------------------------- Test Passed. "deflate_write" end time: Apr 20 23:06 CST "deflate_write" time elapsed: 00:00:00 ---------------------------------------------------------- 7/27 Testing: deflate_read 7/27 Test: deflate_read Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_deflate_read" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "deflate_read" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: HDF5 read deflate Test time = 0.07 sec ---------------------------------------------------------- Test Passed. "deflate_read" end time: Apr 20 23:06 CST "deflate_read" time elapsed: 00:00:00 ---------------------------------------------------------- 8/27 Testing: deflate_props 8/27 Test: deflate_props Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_deflate_props" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "deflate_props" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- #1 filesize (Mbytes): 0.03 compression ratio: 7.8 OK: HDF5 read deflate properties OK: HDF5 get deflate Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "deflate_props" end time: Apr 20 23:06 CST "deflate_props" time elapsed: 00:00:00 ---------------------------------------------------------- 9/27 Testing: destructor 9/27 Test: destructor Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_destructor" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "destructor" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- auto-closing test_destruct.h5 OK: destructor write auto-closing test_destruct.h5 OK: destructor read Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "destructor" end time: Apr 20 23:06 CST "destructor" time elapsed: 00:00:00 ---------------------------------------------------------- 10/27 Testing: exist 10/27 Test: exist Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_exist" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "exist" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: is_hdf5 test_exist: creating file exist.h5 TRACE:h5fortran:h5open: initializing HDF5 library creating test dataset /x test_exist: closing file exist.h5 test_exist: attemping to open file: exist.h5 test_exist: library still initialized: T test_exist: check h5exist() on file: exist.h5 OK: exist OK: softlink OK: multiple files open at once Test time = 0.07 sec ---------------------------------------------------------- Test Passed. "exist" end time: Apr 20 23:06 CST "exist" time elapsed: 00:00:00 ---------------------------------------------------------- 11/27 Testing: groups 11/27 Test: groups Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_groups" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "groups" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- TRACE:h5fortran:h5open: initializing HDF5 library OK: HDF5 group OK: write existing variable Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "groups" end time: Apr 20 23:06 CST "groups" time elapsed: 00:00:00 ---------------------------------------------------------- 19/27 Testing: write 19/27 Test: write Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_write" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "write" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: test simple write OK: test layout write Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "write" end time: Apr 20 23:06 CST "write" time elapsed: 00:00:00 ---------------------------------------------------------- 12/27 Testing: layout 12/27 Test: layout Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_layout" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "layout" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: test layout Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "layout" end time: Apr 20 23:06 CST "layout" time elapsed: 00:00:00 ---------------------------------------------------------- 13/27 Testing: lt 13/27 Test: lt Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_lt" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "lt" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- Test time = 0.08 sec ---------------------------------------------------------- Test Passed. "lt" end time: Apr 20 23:06 CST "lt" time elapsed: 00:00:00 ---------------------------------------------------------- 14/27 Testing: scalar 14/27 Test: scalar Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_scalar" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "scalar" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: scalar and vector: write and rewrite OK: scalar and vector: read Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "scalar" end time: Apr 20 23:06 CST "scalar" time elapsed: 00:00:00 ---------------------------------------------------------- 15/27 Testing: shape 15/27 Test: shape Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_shape" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "shape" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: test_shape Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "shape" end time: Apr 20 23:06 CST "shape" time elapsed: 00:00:00 ---------------------------------------------------------- 16/27 Testing: string 16/27 Test: string Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_string" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "string" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: HDF5 string write OK: HDF5 string read OK: string overwrite PASSED: HDF5 string write/read Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "string" end time: Apr 20 23:06 CST "string" time elapsed: 00:00:00 ---------------------------------------------------------- 17/27 Testing: string_read 17/27 Test: string_read Command: "" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "string_read" start time: Output: ---------------------------------------------------------- Test time = 0.00 sec ---------------------------------------------------------- Test Passed. "string_read" end time: Apr 20 23:06 CST "string_read" time elapsed: 00:00:00 ---------------------------------------------------------- 18/27 Testing: version 18/27 Test: version Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_version" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "version" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- 1.14.0 Test time = 0.05 sec ---------------------------------------------------------- Test Passed. "version" end time: Apr 20 23:06 CST "version" time elapsed: 00:00:00 ---------------------------------------------------------- 20/27 Testing: fail_read_size_mismatch 20/27 Test: fail_read_size_mismatch Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_fail_read_size_mismatch" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "fail_read_size_mismatch" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- ERROR:h5fortran:shape_check: shape mismatch /int32-1d = 2 variable shape = 1 ERROR STOP Error termination. Backtrace: #0 0xf19db Test time = 0.13 sec ---------------------------------------------------------- Test Passed. "fail_read_size_mismatch" end time: Apr 20 23:06 CST "fail_read_size_mismatch" time elapsed: 00:00:00 ---------------------------------------------------------- 21/27 Testing: fail_read_rank_mismatch 21/27 Test: fail_read_rank_mismatch Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_fail_read_rank_mismatch" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "fail_read_rank_mismatch" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- ERROR:h5fortran:rank_check: rank mismatch /int32-1d = 1 variable rank =2 ERROR STOP Error termination. Backtrace: #0 0xf19db Test time = 0.13 sec ---------------------------------------------------------- Test Passed. "fail_read_rank_mismatch" end time: Apr 20 23:06 CST "fail_read_rank_mismatch" time elapsed: 00:00:00 ---------------------------------------------------------- 22/27 Testing: fail_nonexist_variable 22/27 Test: fail_nonexist_variable Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_fail_nonexist_variable" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "fail_nonexist_variable" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- ERROR STOP ERROR:h5fortran:open: action=r not an HDF5 file: bad.h5 Error termination. Backtrace: #0 0xf19db Test time = 0.12 sec ---------------------------------------------------------- Test Passed. "fail_nonexist_variable" end time: Apr 20 23:06 CST "fail_nonexist_variable" time elapsed: 00:00:00 ---------------------------------------------------------- 23/27 Testing: fill 23/27 Test: fill Command: "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_fill" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "fill" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- OK: fill value Test time = 0.06 sec ---------------------------------------------------------- Test Passed. "fill" end time: Apr 20 23:06 CST "fill" time elapsed: 00:00:00 ---------------------------------------------------------- 24/27 Testing: PythonAttributes 24/27 Test: PythonAttributes Command: "" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "PythonAttributes" start time: Output: ---------------------------------------------------------- Test time = 0.00 sec ---------------------------------------------------------- Test Passed. "PythonAttributes" end time: Apr 20 23:06 CST "PythonAttributes" time elapsed: 00:00:00 ---------------------------------------------------------- 25/27 Testing: PythonShape 25/27 Test: PythonShape Command: "" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "PythonShape" start time: Output: ---------------------------------------------------------- Test time = 0.00 sec ---------------------------------------------------------- Test Passed. "PythonShape" end time: Apr 20 23:06 CST "PythonShape" time elapsed: 00:00:00 ---------------------------------------------------------- 26/27 Testing: PythonString 26/27 Test: PythonString Command: "" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "PythonString" start time: Output: ---------------------------------------------------------- Test time = 0.00 sec ---------------------------------------------------------- Test Passed. "PythonString" end time: Apr 20 23:06 CST "PythonString" time elapsed: 00:00:00 ---------------------------------------------------------- 27/27 Testing: h5ls 27/27 Test: h5ls Command: "/opt/local/bin/h5ls" "/opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test/test_shape.h5/d7" Directory: /opt/local/var/macports/build/_opt_PPCSnowLeopardPorts_fortran_h5fortran/h5fortran/work/build/test "h5ls" start time: Apr 20 23:06 CST Output: ---------------------------------------------------------- d7 Dataset {5, 6, 7, 4, 3, 1, 2} Test time = 0.07 sec ---------------------------------------------------------- Test Pass Reason: Required regular expression found. Regex=[{5, 6, 7, 4, 3, 1, 2}] "h5ls" end time: Apr 20 23:06 CST "h5ls" time elapsed: 00:00:00 ---------------------------------------------------------- End testing: Apr 20 23:06 CST h5fortran = 1.85 sec*proc python = 0.00 sec*proc shaky = 0.37 sec*proc ```
scivision commented 1 year ago

I don't see this on macOS with Apple Silicon. I wonder if it's a bug with HDF5 itself for Apple PowerPC?

barracuda156 commented 1 year ago

I don't see this on macOS with Apple Silicon. I wonder if it's a bug with HDF5 itself for Apple PowerPC?

@scivision Well, I will run the test-suite for hdf5 now and update you.

barracuda156 commented 1 year ago

@scivision Indeed may be the case, since while everything else passes, specifically Fortran ones do not:

:info:test Making check in fortran
:info:test Making check in src
:info:test /usr/bin/make  check-am
:info:test /usr/bin/make  check-TESTS
:info:test make[6]: Nothing to be done for `_exec_check-s'.
:info:test Making check in test
:info:test /usr/bin/make  fortranlib_test fflush1 fflush2 fortranlib_test_1_8 fortranlib_test_F03 vol_connector
:info:test make[3]: `fortranlib_test' is up to date.
:info:test make[3]: `fflush1' is up to date.
:info:test make[3]: `fflush2' is up to date.
:info:test make[3]: `fortranlib_test_1_8' is up to date.
:info:test make[3]: `fortranlib_test_F03' is up to date.
:info:test make[3]: `vol_connector' is up to date.
:info:test /usr/bin/make  check-TESTS
:info:test ===Serial tests in test begin Mon Apr 24 19:10:34 CST 2023===
:info:test ============================
:info:test Fortran API: Testing fortranlib_test 
:info:test ============================
:info:test Fortran API: Test log for fortranlib_test 
:info:test ============================
:info:test Program received signal SIGBUS: Access to an undefined portion of a memory object.
:info:test Backtrace for this error:
:info:test #0  0xf19db
:info:test Command terminated abnormally.
:info:test         8.39 real         0.03 user         0.09 sys
:info:test make[5]: *** [fortranlib_test.chkexe_] Error 1
:info:test make[4]: *** [build-check-s] Error 2
barracuda156 commented 1 year ago

Open an issue with upstream: https://github.com/HDFGroup/hdf5/issues/2799

barracuda156 commented 1 year ago

@scivision More detailed output:

36-118% sudo /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.0/fortran/test/fortranlib_test 
                        ==========================                            
                               FORTRAN tests 
                        ==========================                            
 h5open/h5close test                                                                    PASSED 

 FORTRANLIB_TEST is linked with HDF5 Library version 1.14 release 0

 Mounting test                                                                          PASSED 
 Reopen test                                                                            PASSED 
 Get name test                                                                          PASSED 
 File open/close test                                                                   PASSED 
 File free space test                                                                   PASSED 
 Dataset test                                                                           PASSED 
 Extendible dataset test                                                                PASSED 
 Dataset offset with user block                                                         PASSED 

Program received signal SIGBUS: Access to an undefined portion of a memory object.

Backtrace for this error:
#0  0xf19db
zsh: bus error  sudo

36-118% sudo /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.0/fortran/test/fortranlib_test_F03 
                        ==============================
                              FORTRAN 2003 tests      
                        ==============================
 FORTRANLIB_TEST is linked with HDF5 Library version 1.14 release 0

 Testing 1-D Array of Compound Datatypes Functionality                                  PASSED 
 Testing 1-D Array of Compound Array Datatypes Functionality                            PASSED 
 Testing 3-D array by dataset, using C_LOC                                              PASSED 
 Testing writing/reading enum dataset, using C_LOC                                      PASSED 
 Testing enumeration conversions                                                        PASSED 
 Testing writing/reading bitfield dataset, using C_LOC                                  PASSED 
 Testing writing/reading opaque datatypes, using C_LOC                                  PASSED 
 Testing writing/reading object references, using C_LOC                                 PASSED 
 Testing writing/reading region references, using C_LOC                                 PASSED 
 Testing writing/reading variable-length datatypes, using C_LOC                         PASSED 
 Testing writing/reading variable-string datatypes, using C_LOC                         PASSED 
 Testing variable-string write/read, using h5dwrite_f/h5dread_f                         PASSED 
 Testing writing/reading string datatypes, using C_LOC                                  PASSED 
 Testing string datatypes containing control characters                                 PASSED 
 Testing filling functions                                                              PASSED 

Program received signal SIGBUS: Access to an undefined portion of a memory object.

Backtrace for this error:
#0  0xf19db
zsh: bus error  sudo

36-118% sudo /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.14.0/fortran/test/fortranlib_test_1_8 
                        ==========================                            
                               FORTRAN 1.8 tests 
                        ==========================                            
 FORTRANLIB_TEST is linked with HDF5 Library version 1.14 release 0

 Testing with new file format:
  - Tests INT attributes on both datasets and groups                                    PASSED 
  - Testing with shared attributes:
   - Testing INT attributes on both datasets and groups                                 PASSED 
   - Testing storing attribute with "null" dataspace                                    PASSED 
   - Testing storing lots of attributes                                                 PASSED 
   - Testing creating objects with attribute creation order                             PASSED 
   - Testing compact storage on objects with attribute creation order                   PASSED 
   - Testing querying attribute info by index                                           PASSED 
   - Testing deleting attribute by index                                                PASSED 
    - Testing Creating Attributes By Name w/o Creation Order Index
    - Testing Creating Attributes By Name w/Creation Order Index
   - Testing creating attributes by name                                                PASSED 
   - Testing renaming shared attributes in "compact" & "dense" storage                  PASSED 
   - Testing deleting shared attributes in "compact" & "dense" storage                  PASSED 
  - Testing without shared attributes:
   - Testing INT attributes on both datasets and groups                                 PASSED 
   - Testing storing attribute with "null" dataspace                                    PASSED 
   - Testing storing lots of attributes                                                 PASSED 
   - Testing creating objects with attribute creation order                             PASSED 
   - Testing compact storage on objects with attribute creation order                   PASSED 
   - Testing querying attribute info by index                                           PASSED 
   - Testing deleting attribute by index                                                PASSED 
    - Testing Creating Attributes By Name w/o Creation Order Index
    - Testing Creating Attributes By Name w/Creation Order Index
   - Testing creating attributes by name                                                PASSED 
 Testing with old file format:
  - Tests INT attributes on both datasets and groups                                    PASSED 
 Testing attributes                                                                     PASSED 
 link creation (w/new group format)
 Testing building a file with assorted links                                            PASSED 
 Testing links are correct and building assorted links                                  PASSED 
 Testing create group with creation order indices, test querying group info             PASSED 
 Testing disabling tracking timestamps for an object                                    PASSED 
 Testing moving and renaming links preserves their properties                           PASSED 
 Testing deleting links by index                                                        PASSED 
 Testing link creation property lists                                                   PASSED 
 Testing object copy                                                                    PASSED 
 Testing adding links to a group follow proper "lifecycle"                              PASSED 
 Testing groups                                                                         PASSED 
 Testing object interface                                                               PASSED 
 Testing data transform                                                                 PASSED 
 Testing dataspace encoding and decoding                                                PASSED 
 Testing scaleoffset filter                                                             PASSED 
 Testing basic generic property list class creation functionality                       PASSED 

                   ============================================  
                    FORTRAN tests completed with    0 error(s) ! 
                   ============================================
barracuda156 commented 1 year ago

@scivision Could you say what specifically this test depends on?

call h%read('/scalar_int32', i64)
if(i64 /= 42) error stop 'scalar cast int32 => int64'

At this point we are pretty sure it is an upstream bug, but tracking it will be helpful.