davidedelvento
commented
2 years ago 
Closed davidedelvento closed 2 years ago
davidedelvento
commented
2 years ago
davidedelvento
commented
2 years ago Redoplying a few day later made the problem go away. The conda list for the broken installation is
# packages in environment at /opt/tljh/user:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
alembic 1.7.6 pypi_0 pypi
anyio 3.5.0 pypi_0 pypi
argon2-cffi 21.3.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
asttokens 2.0.5 pypi_0 pypi
async-generator 1.10 pypi_0 pypi
attrs 21.4.0 pypi_0 pypi
babel 2.9.1 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
beautifulsoup4 4.10.0 pypi_0 pypi
bleach 4.1.0 pypi_0 pypi
brotlipy 0.7.0 py39h3811e60_1001 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.17.2 h7f98852_0 conda-forge
ca-certificates 2021.10.8 ha878542_0 conda-forge
certifi 2021.10.8 py39hf3d152e_1 conda-forge
certipy 0.1.3 pypi_0 pypi
cffi 1.14.6 py39h4bc2ebd_1 conda-forge
chardet 4.0.0 py39hf3d152e_1 conda-forge
charset-normalizer 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
conda 4.11.0 py39hf3d152e_2 conda-forge
conda-package-handling 1.7.3 py39h3811e60_0 conda-forge
cryptography 3.4.8 py39hbca0aa6_0 conda-forge
debugpy 1.5.1 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 0.8.3 pypi_0 pypi
greenlet 1.1.2 pypi_0 pypi
icu 68.1 h58526e2_0 conda-forge
idna 3.1 pyhd3deb0d_0 conda-forge
ipykernel 6.9.2 pypi_0 pypi
ipython 8.1.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 7.6.5 pypi_0 pypi
jedi 0.18.1 pypi_0 pypi
jinja2 3.0.3 pypi_0 pypi
jpype1 1.3.0 pypi_0 pypi
json5 0.9.6 pypi_0 pypi
jsonschema 4.4.0 pypi_0 pypi
jupyter-resource-usage 0.6.1 pypi_0 pypi
jupyter-server 1.15.2 pypi_0 pypi
jupyter-telemetry 0.1.0 pypi_0 pypi
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.2 py39hf3d152e_0 conda-forge
jupyterhub 1.5.0 pypi_0 pypi
jupyterlab 3.3.2 pypi_0 pypi
jupyterlab-pygments 0.1.2 pypi_0 pypi
jupyterlab-server 2.10.3 pypi_0 pypi
jupyterlab-widgets 1.0.2 pypi_0 pypi
krb5 1.19.2 hcc1bbae_2 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
libarchive 3.5.2 hccf745f_1 conda-forge
libcurl 7.79.1 h2574ce0_1 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h9c3ff4c_4 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-ng 11.2.0 h1d223b6_11 conda-forge
libgomp 11.2.0 h1d223b6_11 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libnghttp2 1.43.0 h812cca2_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.19 h780b84a_5 conda-forge
libssh2 1.10.0 ha56f1ee_2 conda-forge
libstdcxx-ng 11.2.0 he4da1e4_11 conda-forge
libxml2 2.9.12 h72842e0_0 conda-forge
libzlib 1.2.11 h36c2ea0_1013 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mako 1.2.0 pypi_0 pypi
mamba 0.16.0 py39h951de11_0 conda-forge
markupsafe 2.1.0 pypi_0 pypi
matplotlib-inline 0.1.3 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
nb_conda_kernels 2.3.1 py39hf3d152e_1 conda-forge
nbclassic 0.3.6 pypi_0 pypi
nbclient 0.5.13 pypi_0 pypi
nbconvert 6.4.4 pypi_0 pypi
nbformat 5.2.0 pypi_0 pypi
nbgitpuller 1.0.2 pypi_0 pypi
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
nodejs 6.13.1 0 conda-forge
notebook 6.4.9 pypi_0 pypi
notebook-shim 0.1.0 pypi_0 pypi
nteract-on-jupyter 2.1.3 pypi_0 pypi
oauthlib 3.2.0 pypi_0 pypi
openssl 1.1.1l h7f98852_0 conda-forge
packaging 21.3 pypi_0 pypi
pamela 1.0.0 pypi_0 pypi
pandocfilters 1.5.0 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pip 22.0.4 pypi_0 pypi
prometheus-client 0.13.1 pypi_0 pypi
prompt-toolkit 3.0.28 pypi_0 pypi
psutil 5.9.0 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pycosat 0.6.3 py39h3811e60_1006 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.11.2 pypi_0 pypi
pynetlogo 0.4.2 pypi_0 pypi
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pypi_0 pypi
pyrsistent 0.18.1 pypi_0 pypi
pysocks 1.7.1 py39hf3d152e_3 conda-forge
python 3.9.7 hb7a2778_3_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.2 pypi_0 pypi
python_abi 3.9 2_cp39 conda-forge
pytz 2021.3 pypi_0 pypi
pyzmq 22.3.0 py39h37b5a0c_1 conda-forge
readline 8.1 h46c0cb4_0 conda-forge
reproc 14.2.3 h7f98852_0 conda-forge
reproc-cpp 14.2.3 h9c3ff4c_0 conda-forge
requests 2.26.0 pyhd8ed1ab_0 conda-forge
ruamel-yaml 0.17.21 pypi_0 pypi
ruamel-yaml-clib 0.2.6 pypi_0 pypi
ruamel_yaml 0.15.80 py39h3811e60_1004 conda-forge
send2trash 1.8.0 pypi_0 pypi
setuptools 58.2.0 py39hf3d152e_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.2.0 pypi_0 pypi
soupsieve 2.3.1 pypi_0 pypi
sqlalchemy 1.4.32 pypi_0 pypi
sqlite 3.36.0 h9cd32fc_2 conda-forge
stack-data 0.2.0 pypi_0 pypi
terminado 0.13.3 pypi_0 pypi
testpath 0.6.0 pypi_0 pypi
tk 8.6.11 h27826a3_1 conda-forge
tornado 6.1 py39h3811e60_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
tzdata 2021c he74cb21_0 conda-forge
urllib3 1.26.7 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.3.1 pypi_0 pypi
wheel 0.37.0 pyhd8ed1ab_1 conda-forge
widgetsnbextension 3.5.2 pypi_0 pypi
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zlib 1.2.11 h36c2ea0_1013 conda-forge
zstd 1.5.0 ha95c52a_0 conda-forgeThe conda list for the working installation of few days later is
# packages in environment at /opt/tljh/user:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
alembic 1.7.7 pypi_0 pypi
anyio 3.5.0 pypi_0 pypi
argon2-cffi 21.3.0 pypi_0 pypi
argon2-cffi-bindings 21.2.0 pypi_0 pypi
asttokens 2.0.5 pypi_0 pypi
async-generator 1.10 pypi_0 pypi
attrs 21.4.0 pypi_0 pypi
babel 2.9.1 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
beautifulsoup4 4.10.0 pypi_0 pypi
bleach 4.1.0 pypi_0 pypi
brotlipy 0.7.0 py39h3811e60_1001 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.17.2 h7f98852_0 conda-forge
ca-certificates 2021.10.8 ha878542_0 conda-forge
certifi 2021.10.8 py39hf3d152e_1 conda-forge
certipy 0.1.3 pypi_0 pypi
cffi 1.14.6 py39h4bc2ebd_1 conda-forge
chardet 4.0.0 py39hf3d152e_1 conda-forge
charset-normalizer 2.0.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
conda 4.12.0 py39hf3d152e_0 conda-forge
conda-package-handling 1.7.3 py39h3811e60_0 conda-forge
cryptography 3.4.8 py39hbca0aa6_0 conda-forge
debugpy 1.5.1 pypi_0 pypi
decorator 5.1.1 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
executing 0.8.3 pypi_0 pypi
greenlet 1.1.2 pypi_0 pypi
icu 68.1 h58526e2_0 conda-forge
idna 3.1 pyhd3deb0d_0 conda-forge
ipykernel 6.9.2 pypi_0 pypi
ipython 8.1.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 7.7.0 pypi_0 pypi
jedi 0.18.1 pypi_0 pypi
jinja2 3.0.3 pypi_0 pypi
jpype1 1.3.0 pypi_0 pypi
json5 0.9.6 pypi_0 pypi
jsonschema 4.4.0 pypi_0 pypi
jupyter-resource-usage 0.6.1 pypi_0 pypi
jupyter-server 1.15.6 pypi_0 pypi
jupyter-telemetry 0.1.0 pypi_0 pypi
jupyter_client 7.1.2 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.2 py39hf3d152e_0 conda-forge
jupyterhub 1.5.0 pypi_0 pypi
jupyterlab 3.3.2 pypi_0 pypi
jupyterlab-pygments 0.1.2 pypi_0 pypi
jupyterlab-server 2.11.2 pypi_0 pypi
jupyterlab-widgets 1.1.0 pypi_0 pypi
krb5 1.19.2 hcc1bbae_2 conda-forge
ld_impl_linux-64 2.36.1 hea4e1c9_2 conda-forge
libarchive 3.5.2 hccf745f_1 conda-forge
libcurl 7.79.1 h2574ce0_1 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h9c3ff4c_4 conda-forge
libgcc-ng 11.2.0 h1d223b6_11 conda-forge
libgomp 11.2.0 h1d223b6_11 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libnghttp2 1.43.0 h812cca2_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsolv 0.7.19 h780b84a_5 conda-forge
libssh2 1.10.0 ha56f1ee_2 conda-forge
libstdcxx-ng 11.2.0 he4da1e4_11 conda-forge
libxml2 2.9.12 h72842e0_0 conda-forge
libzlib 1.2.11 h36c2ea0_1013 conda-forge
lz4-c 1.9.3 h9c3ff4c_1 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mako 1.2.0 pypi_0 pypi
mamba 0.16.0 py39h951de11_0 conda-forge
markupsafe 2.1.1 pypi_0 pypi
matplotlib-inline 0.1.3 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
nb_conda_kernels 2.3.1 py39hf3d152e_1 conda-forge
nbclassic 0.3.7 pypi_0 pypi
nbclient 0.5.13 pypi_0 pypi
nbconvert 6.4.4 pypi_0 pypi
nbformat 5.2.0 pypi_0 pypi
nbgitpuller 1.0.2 pypi_0 pypi
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
notebook 6.4.10 pypi_0 pypi
notebook-shim 0.1.0 pypi_0 pypi
nteract-on-jupyter 2.1.3 pypi_0 pypi
oauthlib 3.2.0 pypi_0 pypi
openssl 1.1.1l h7f98852_0 conda-forge
packaging 21.3 pypi_0 pypi
pamela 1.0.0 pypi_0 pypi
pandocfilters 1.5.0 pypi_0 pypi
parso 0.8.3 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pip 22.0.4 pypi_0 pypi
prometheus-client 0.13.1 pypi_0 pypi
prompt-toolkit 3.0.28 pypi_0 pypi
psutil 5.9.0 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pure-eval 0.2.2 pypi_0 pypi
pycosat 0.6.3 py39h3811e60_1006 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.11.2 pypi_0 pypi
pynetlogo 0.4.2 pypi_0 pypi
pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.7 pypi_0 pypi
pyrsistent 0.18.1 pypi_0 pypi
pysocks 1.7.1 py39hf3d152e_3 conda-forge
python 3.9.7 hb7a2778_3_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.2 pypi_0 pypi
python_abi 3.9 2_cp39 conda-forge
pytz 2021.3 pypi_0 pypi
pyzmq 22.3.0 py39h37b5a0c_1 conda-forge
readline 8.1 h46c0cb4_0 conda-forge
reproc 14.2.3 h7f98852_0 conda-forge
reproc-cpp 14.2.3 h9c3ff4c_0 conda-forge
requests 2.26.0 pyhd8ed1ab_0 conda-forge
ruamel-yaml 0.17.21 pypi_0 pypi
ruamel-yaml-clib 0.2.6 pypi_0 pypi
ruamel_yaml 0.15.80 py39h3811e60_1004 conda-forge
send2trash 1.8.0 pypi_0 pypi
setuptools 58.2.0 py39hf3d152e_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.2.0 pypi_0 pypi
soupsieve 2.3.1 pypi_0 pypi
sqlalchemy 1.4.32 pypi_0 pypi
sqlite 3.36.0 h9cd32fc_2 conda-forge
stack-data 0.2.0 pypi_0 pypi
terminado 0.13.3 pypi_0 pypi
testpath 0.6.0 pypi_0 pypi
tk 8.6.11 h27826a3_1 conda-forge
tornado 6.1 py39h3811e60_2 conda-forge
tqdm 4.62.3 pyhd8ed1ab_0 conda-forge
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
tzdata 2021c he74cb21_0 conda-forge
urllib3 1.26.7 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
websocket-client 1.3.1 pypi_0 pypi
wheel 0.37.0 pyhd8ed1ab_1 conda-forge
widgetsnbextension 3.6.0 pypi_0 pypi
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
zeromq 4.3.4 h9c3ff4c_1 conda-forge
zlib 1.2.11 h36c2ea0_1013 conda-forge
zstd 1.5.0 ha95c52a_0 conda-forgeThe possible suspects which might have caused the problem are
ipywidgets which was upgraded from 7.6.5 to 7.7.0jupyter-server which was upgraded from 1.15.2 to 1.15.6jupyterlab-server which was upgraded from 2.10.3 to 2.11.2jupyterlab-widgets which was upgraded from 1.0.2 to 1.1.0Not investigating the problem further at this point, will revisit if/when appropriate.