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geraldinepascal / FROGS

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
GNU General Public License v3.0
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Access to the web #24

Closed mahendra-mariadassou closed 5 years ago

mahendra-mariadassou commented 6 years ago

FROGS relies on some external dependencies (FileSaver.js) and R code in a github depo that makes it unsuitable for use on clusters that do not allow https connection from their cluster node.

The code should be reworked to depend only on "local" material.

mahendra-mariadassou commented 6 years ago

A partial solution is now available. All Rmd scripts rely on "local" copies of the scripts.

Stable versions of those scripts correspond to release 0.99 of phyloseq-extended (https://github.com/mahendra-mariadassou/phyloseq-extended/releases) and should be copied to lib/ and tools/lib.