phyloseq_composition.py script fails

geraldinepascal / FROGS

FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.

GNU General Public License v3.0

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phyloseq_composition.py script fails #53

Closed ahorvath closed 3 years ago

ahorvath commented 3 years ago

Dear Authors,

We are testing the new version of Frogs (3.2.2) and bumped into the following error: Can you please help us solve this issue?

FROGS_error.zip

Many thanks in advance. Best, Attila

mariabernard commented 3 years ago

Dear Attila,

I download your files and launch the exact same command and everything is fine. I tested with the varExp set to SampleID and set to Condition.

Could you please indicate me how you install FROGS? Could you test again your command by adding the --debug option and send me the temporary stderr file of the Rscript command.

ahorvath commented 3 years ago

We could find the issue using the debug option. Works now, thanks for your help, @mariabernard!