FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
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deseq2_visualisation fails when there are no differentially abundant OTU #63
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mahendra-mariadassou closed 1 year ago
The problem originates from https://github.com/geraldinepascal/FROGS/blob/c5c4996af28627fcc7c196874a83a1d59b71fc10/tools/deseq2_visualisation/deseq2_visualisation.Rmd#L211
as
prune_taxa()throws an error when no taxa is selected.