Particularly with the addition of new plots and output files (bead ROIs, regional barcode spot counts plot, locus-specific spot counts plot) -- or even fields within output files (e.b., the QC fail columns in the unfiltered traces file, or the fail_code column in detected bead ROIs) -- we should have documentation for what these fields mean, and what data's depicted in which plots, as well as where all this is located within an experiment's many analysis output folder.
Particularly with the addition of new plots and output files (bead ROIs, regional barcode spot counts plot, locus-specific spot counts plot) -- or even fields within output files (e.b., the QC fail columns in the unfiltered traces file, or the
fail_codecolumn in detected bead ROIs) -- we should have documentation for what these fields mean, and what data's depicted in which plots, as well as where all this is located within an experiment's many analysis output folder.