All that's gotten from ImageHandler is the path for the bead ROIs folder and the number of timepoints (by the length of the frame_name list from the config file. Instead, for each FOV, this length could be gotten from the array that's the value of the "shape" key in a .zarray file (1 for each FOV). Example:
All that's gotten from ImageHandler is the path for the bead ROIs folder and the number of timepoints (by the length of the
frame_name
list from the config file. Instead, for each FOV, this length could be gotten from the array that's the value of the "shape" key in a.zarray
file (1 for each FOV). Example: