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looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
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Ignore/skip image stacks with too few bead ROIs for drift correction
#227
Closed
vreuter
closed
5 months ago
vreuter
commented
5 months ago
Fix linter configuration for
R
Add tools for diagnostics of off-center spot images for tracing
Fix bug in spot counts visualisation, related to dimensional (column count) mismatch b/w filtered and unfiltered tables/files
Always tolerate too-few-beads for drift correction (#222 / #173)
Nicer formatting for file with messages about skipped (FOV, time) image stacks for tracing image extraction
Remove default for spot detection threshold, make it required
Fix CLI options for regional barcode grouping for proximity filtering (#198 - related)
Close #222 Close #198
RClose #222 Close #198