We need to explicitly, concretely specify proximity-based spot filtration behavior for spots from the same regional barcode

gerlichlab / looptrace

Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace

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We need to explicitly, concretely specify proximity-based spot filtration behavior for spots from the same regional barcode #228

Closed vreuter closed 3 months ago

vreuter commented 5 months ago

[x] for trivial / empty grouping specification
[x] for prohibitive grouping specification
[x] for permissive grouping specification

vreuter commented 4 months ago

Discussed w/ @TLSteinacker , and it's decided that proximal spots from the same regional barcode should always be kept (i.e., the proximity-based filtration doesn't apply to them.)