gerlichlab / looptrace

Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
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Feature: ability to compute distances between locus-specific spots from different trace IDs #234

Closed vreuter closed 4 months ago

vreuter commented 5 months ago

Some different regional barcodes may be in close proximity and we'd like to compute distance b/w locus-specific spots identified within the corresponding ROIs, even though that may mean computing distance b/w a pair of spots from different regional barcodes.

@TLSteinacker

vreuter commented 4 months ago

From discussion w/ @TLSteinacker , need to be aware of cases in which one sister's regional barcode yields spots that are considerably brighter than that of the other sister. In this case, we could end up losing some data. To counteract this, we could consider trying to expand the ROI to capture the hypothetical dimmer regional spot for the sister which should be nearby.

vreuter commented 4 months ago

Superseded by #279