gerlichlab / looptrace

Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
MIT License
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Some pipeline dependencies could be conditional #251

Open vreuter opened 5 months ago

vreuter commented 5 months ago

In theory, we could build an image for each pipeline step, or a subset of them (#3 ), but this may be cumbersome from an infrastructure point of view. More simply, perhaps, we could allow the build of a Docker image that would be intended for just a subset of the pipeline steps, allowing the builder to omit a subset of the (bulkier) dependencies like TensorFlow / tensorrt (#47 / #235 ) or Cellpose (e.g., if not running nuclei detection, or if running with the simpler threshold method).