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looptrace
Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
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Regional spot visualisation tweaks
#255
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vreuter
opened
4 months ago
vreuter
commented
4 months ago
[x] Specify subset of positions
[x]
Combine timepoints
[x]
Use different filtered spot ROIs files (unfiltered, proximity-filtered, proximity- + nuclei-filtered)
[ ] Include background-subtracted image if available
[ ] Include transformed image file if available (i.e., for DoG detection method).
[x] Interrupt and check interactively, or save a small sample and check post-hoc
[x] Allow position in
z
to alter bounding box / ROI color for projections in 2D
vreuter
commented
4 months ago
Successor to #63
Combine timepointsUse different filtered spot ROIs files (unfiltered, proximity-filtered, proximity- + nuclei-filtered)z
to alter bounding box / ROI color for projections in 2D