Nuclei segmentation method recommendation is wrong, and pipeline can't parse this value

gerlichlab / looptrace

Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace

MIT License

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Closed vreuter closed 3 months ago

vreuter commented 3 months ago

SegmentationMethod.unsafe_from_string always returns None or raises an error, and the new name for "nuclei" setting is "cellpose".