download the database separately

geronimp / enrichM

Toolbox for comparative genomics of MAGs

80 stars 22 forks source link

download the database separately #117

Closed liupfskygre closed 3 years ago

liupfskygre commented 3 years ago

Hi, happy 2021! I got some issues when downloading the database with enrichm data, I could download from https://data.ace.uq.edu.au/public/enrichm/ without using enrichm data,

how could i intergerate this db to make enrichm work.

Thanks.

wwood commented 3 years ago

You can use e.g.

ENRICHM_DB=/path/to/enrichm/data enrichm ...

where /path/to/enrichm/data contains the downloaded and extracted data.

liupfskygre commented 3 years ago

Hi, Ben, thanks. got it work.

cheers, Liu