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geronimp / enrichM

Toolbox for comparative genomics of MAGs
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Issues with Conda installation #136

Open AshSudarshan opened 10 months ago

AshSudarshan commented 10 months ago

Hi! Thanks for developing this tool. I am unable to install this via Conda since it says that the package isn't available there. Any instructions to download the tool through Conda would be helpful.

MaryoHg commented 10 months ago

https://github.com/geronimp/enrichM#conda-recommended

conda create -c bioconda -n enrichm_env enrichm=0.6.5 (?)

AshSudarshan commented 10 months ago

https://github.com/geronimp/enrichM#conda-recommended

conda create -c bioconda -n enrichm_env enrichm=0.6.5 (?)

I did try that but the conda installation stalled saying it couldn't locate the enrichment package:

Screen Shot 2023-11-04 at 10 16 59 PM
MaryoHg commented 10 months ago

I'm actually working on a recent environment. Try installing from this yml-file file:

$ conda env create -n enrichm_env --file enrichm.yml

Good luck!

AshSudarshan commented 10 months ago

Thanks! This solution worked well!!

But, I am getting an error with enrichm data --create:

if version_local!=version_remote: UnboundLocalError: local variable 'version_local' referenced before assignment

It is similar to the issue reported by another user of enrichm and seems to be unsolved at this point.