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geronimp / enrichM

Toolbox for comparative genomics of MAGs
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Using custom databases for annotation #93

Open adityabandla opened 4 years ago

adityabandla commented 4 years ago

Is there an option for users to provide their own databases for the annotation step. I would like to use more recent versions of PFAM and dbCAN for my dataset

adityabandla commented 4 years ago

@geronimp @wwood Is this repo still being actively maintained?

geronimp commented 4 years ago

@adityabandla Yes, you can simply replace the pfam.hmm and cazy.hmm databases in the enrichM database file with the most recent versions. Repo is still maintained yes - have recently been on post phd vacation and I am still catching up on the backlog

adityabandla commented 4 years ago

@geronimp Thanks! Congrats on the PhD, great to hear

adityabandla commented 4 years ago

Is there a way to recreate all the mapping files that are included in a database release, for example pfam_to_clan or pfam_to_description?