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geronimp / enrichM

Toolbox for comparative genomics of MAGs
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Enrichment - PCA plots and KO breakdown plots not generated #98

Open ashley-isaac opened 4 years ago

ashley-isaac commented 4 years ago

Hi All,

I am unsure why none of the plots are being produced. The log states that summary, ko breakdown and PCA plots are being generated, however, these are never produced. I have checked that gridExtra and optparse R packages are installed but still nothing.

Any help would be appreciated.

Thanks, Ashley

amvarani commented 4 years ago

You must install data.table and ggplot2 in R install.packages('data.table') install.packages('ggplot2')

Will work

ashley-isaac commented 4 years ago

Hi @amvarani, I have tried this - I've tried installing in R as well as tried installing with conda. The packages are installed but still no plots generated.

amvarani commented 4 years ago

Hi there, did you installed the last version of enricm (0.5.0) ? Try installing from bioconda conda install -c bioconda enrichm Here I got all plottings properly Hop it will help