from #195 running graft from create, currently have to run extern.run graftM graft ... I'd prefer to do something along the lines of
Graft().graft(...)
But unfortunately Run is tightly coupled to argparse (args is an instance variable). If we make a new Graft class then we might need to also define a Graft.DEFAULT_PARAMETERS so that defaults can be specified in bin/graftM and in the method definition of Graft.graft without repetition (repetition might mean they become out of sync, which would be bad). ..future work.
from #195 running graft from create, currently have to run
extern.run graftM graft ... I'd prefer to do something along the lines ofGraft().graft(...)
But unfortunately Run is tightly coupled to argparse (args is an instance variable). If we make a new Graft class then we might need to also define a Graft.DEFAULT_PARAMETERS so that defaults can be specified in bin/graftM and in the method definition of Graft.graft without repetition (repetition might mean they become out of sync, which would be bad). ..future work.