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gersteinlab / HiC-spector

Spectral and reproducibility analysis of Hi-C contact maps
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TypeError: 'float' object cannot be interpreted as an integer #2

Closed cresswellkg closed 6 years ago

cresswellkg commented 6 years ago

I have been receiving the error TypeError: 'float' object cannot be interpreted as an integer trying to calculate the reproducible score using data of the same form as the data included below:

16000000 16000000 39 16000000 16500000 16 16500000 16500000 1461

The code that I am running is the following:

python run_reproducibility_v2.py t primary.chr22.500000.txt replicate.chr22.500000.txt 500000

Full Traceback

Traceback (most recent call last): File "run_reproducibility_v2.py", line 203, in main()

File "run_reproducibility_v2.py", line 190, in main M1, M2=Parse_matrix_lieberman(sys.argv[2],sys.argv[3],int(sys.argv[4]))

File "run_reproducibility_v2.py", line 63, in Parse_matrix_lieberman M1=lil_matrix((max_index,max_index))

File "C:\Users\Kelis\Anaconda3\lib\site-packages\scipy\sparse\lil.py", line 108, in init self.rows = np.empty((M,), dtype=object)

TypeError: 'float' object cannot be interpreted as an integer

cresswellkg commented 6 years ago

I managed to fix the error by adding the line max_index = int(max_index) after max_index=max_index/resolution+1 in the function Parse_matrix_lieberman.