Inquiry about the definition of each colnames in the output

gerstung-lab / MutationTimeR

An R package to time somatic mutations

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Inquiry about the definition of each colnames in the output #17

Open lincj1994 opened 1 year ago

lincj1994 commented 1 year ago

Hi. I am currently working with MutationTimeR and I am having trouble understanding the meaning of each colnames (from MutCN to pMutCNTail). Could someone please provide me with a definition or explanation of each colnames? Thanks.

 [1] "V1"                   "t_alt_count"          "t_ref_count"          "MutCN"                "MutDeltaCN"          
 [6] "MajCN"                "MinCN"                "MajDerCN"             "MinDerCN"             "CNF"                 
[11] "CNID"                 "pMutCN"               "pGain"                "pSingle"              "pSub"                
[16] "pMutCNTail"           "CLS"

THT-sleepy commented 1 year ago

Hi there!

I have met the same problem and I'm wondering if you have figure it out finally?

I think the meaning of those columns are related to the mathematical statistics method mentioned in the supplementary material of the paper"The evolutionary history of 2658 cancers"(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7054212/bin/41586_2019_1907_MOESM1_ESM.pdf)

However,I know nothing about mathematical statistics...

Best Huatao